SMTL ID : 1yae.1 (8 other biounits)

Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 3 residues within 4Å: Chain A: N.5, T.7, D.8 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.8 Hydrogen bonds: A:T.7

1 x DOQ: (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID(Non-covalent)

DOQ.2: 15 residues within 4Å: Chain A: E.22, K.69, Y.70, G.71, P.98, L.99, A.100, R.105, V.172, E.173, G.175, A.176, T.177, N.208, E.225 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.70, A:Y.70, A:Y.70, A:E.225 Hydrogen bonds: A:Y.70, A:G.71, A:A.100, A:A.176, A:T.177, A:T.177, A:E.225 Water bridges: A:V.172 Salt bridges: A:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nanao, M.H. et al., Structure of the kainate receptor subunit GluR6 agonist-binding domain complexed with domoic acid. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-02-01

Peptides

Glutamate receptor, ionotropic kainate 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate receptor, ionotropic kainate 2

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