SMTL ID : 1yb0.1

Structure of PlyL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.29, H.129, C.137 Ligands: PO4.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.29, A:H.129, A:C.137 ZN.3: 4 residues within 4Å: Chain B: H.29, H.129, C.137 Ligands: PO4.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.29, B:H.129, B:C.137 ZN.5: 4 residues within 4Å: Chain C: H.29, H.129, C.137 Ligands: PO4.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.29, C:H.129, C:C.137

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: H.29, N.30, T.31, E.90, H.129, K.135, C.137 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.31 Water bridges: A:K.135 Salt bridges: A:H.29, A:H.129, A:K.135 PO4.4: 7 residues within 4Å: Chain B: H.29, A.74, E.90, H.129, K.135, C.137 Ligands: ZN.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.74 Water bridges: B:T.31 Salt bridges: B:H.29, B:H.129, B:K.135 PO4.6: 8 residues within 4Å: Chain C: H.29, N.30, A.74, E.90, H.129, K.135, C.137 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.30 Salt bridges: C:H.29, C:H.129, C:K.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Low, L.Y. et al., Structure and lytic activity of a Bacillus anthracis prophage endolysin. J.Biol.Chem. (2005)

Release Date

2005-08-23

Peptides

prophage LambdaBa02, N-acetylmuramoyl-L-alanine amidase, family 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

prophage LambdaBa02, N-acetylmuramoyl-L-alanine amidase, family 2