SMTL ID : 1yc9.1

The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 6 residues within 4Å: Chain A: L.106, Y.295, F.304, D.305, S.306, D.309 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.106, A:Y.295 Hydrogen bonds: A:F.304 Water bridges: A:Y.295 BOG.4: 6 residues within 4Å: Chain B: L.106, Y.295, F.304, D.305, S.306, D.309 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.106, B:Y.295 Hydrogen bonds: B:F.304 Water bridges: B:Y.295 BOG.7: 6 residues within 4Å: Chain C: L.106, Y.295, F.304, D.305, S.306, D.309 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:L.106, C:Y.295 Hydrogen bonds: C:F.304 Water bridges: C:Y.295

6 x HG: MERCURY (II) ION(Non-covalent)

HG.2: 3 residues within 4Å: Chain A: C.50, M.53 Ligands: HG.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.50 HG.3: 3 residues within 4Å: Chain A: C.50, M.53 Ligands: HG.2 No protein-ligand interaction detected (PLIP) HG.5: 3 residues within 4Å: Chain B: C.50, M.53 Ligands: HG.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.50 HG.6: 3 residues within 4Å: Chain B: C.50, M.53 Ligands: HG.5 No protein-ligand interaction detected (PLIP) HG.8: 3 residues within 4Å: Chain C: C.50, M.53 Ligands: HG.9 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.50 HG.9: 3 residues within 4Å: Chain C: C.50, M.53 Ligands: HG.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Federici, L. et al., The crystal structure of the outer membrane protein VCEC from the bacterial pathogen vibrio cholerae at 1.8 A resolution. J.Biol.Chem. (2005)

Release Date

2005-03-01

Peptides

multidrug resistance protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

multidrug resistance protein