- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 27 residues within 4Å:- Chain A: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, S.169, N.170, Q.191, Y.217, S.218, F.220, Q.223, S.224, F.225, F.240, A.257, I.272, P.273, R.274, S.275, N.276, L.277, R.280, N.284, N.310
29 PLIP interactions:28 interactions with chain A, 1 interactions with chain G- Hydrophobic interactions: A:W.24
- Hydrogen bonds: A:C.23, A:W.24, A:D.47, A:D.47, A:Y.52, A:S.169, A:N.170, A:Q.191, A:S.218, A:F.225, A:R.274, A:R.274, A:R.274, A:R.274, A:N.276, A:N.284, A:N.284, A:N.310
- Water bridges: A:S.219, A:T.255, A:T.255, A:R.280, G:R.274
- Salt bridges: A:R.274, A:R.280
- pi-Stacking: A:Y.217, A:F.220, A:F.220
NAP.8: 27 residues within 4Å:- Chain C: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, S.169, N.170, Q.191, Y.217, S.218, F.220, Q.223, S.224, F.225, F.240, A.257, I.272, P.273, R.274, S.275, N.276, L.277, R.280, N.284, N.310
26 PLIP interactions:25 interactions with chain C, 1 interactions with chain E- Hydrophobic interactions: C:W.24
- Hydrogen bonds: C:C.23, C:W.24, C:D.47, C:S.169, C:N.170, C:Q.191, C:S.218, C:F.225, C:R.274, C:R.274, C:R.274, C:R.274, C:N.276, C:N.284, C:N.284, C:N.310
- Water bridges: C:Y.52, C:S.219, C:R.280, E:R.274
- Salt bridges: C:R.274, C:R.280
- pi-Stacking: C:Y.217, C:F.220, C:F.220
NAP.14: 27 residues within 4Å:- Chain E: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, S.169, N.170, Q.191, Y.217, F.220, Q.223, S.224, F.225, F.240, A.257, I.272, P.273, R.274, S.275, N.276, L.277, R.280, Q.283, N.284, N.310
28 PLIP interactions:27 interactions with chain E, 1 interactions with chain C- Hydrophobic interactions: E:W.24
- Hydrogen bonds: E:C.23, E:W.24, E:D.47, E:D.47, E:Y.52, E:S.169, E:N.170, E:Q.191, E:S.218, E:F.220, E:S.224, E:S.224, E:R.274, E:R.274, E:R.274, E:N.276, E:Q.283, E:N.284, E:N.310
- Water bridges: E:S.219, E:T.255, C:R.280
- Salt bridges: E:R.274, E:R.280
- pi-Stacking: E:Y.217, E:F.220, E:F.220
NAP.20: 27 residues within 4Å:- Chain G: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, S.169, N.170, Q.191, Y.217, F.220, Q.223, S.224, F.225, F.240, A.257, I.272, P.273, R.274, S.275, N.276, L.277, R.280, Q.283, N.284, N.310
26 PLIP interactions:25 interactions with chain G, 1 interactions with chain A- Hydrophobic interactions: G:W.24
- Hydrogen bonds: G:C.23, G:W.24, G:D.47, G:S.169, G:N.170, G:Q.191, G:S.218, G:F.220, G:S.224, G:S.224, G:R.274, G:R.274, G:R.274, G:N.276, G:Q.283, G:N.284, G:N.310
- Water bridges: G:Y.52, G:S.219, A:R.280
- Salt bridges: G:R.274, G:R.280
- pi-Stacking: G:Y.217, G:F.220, G:F.220
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.6: 29 residues within 4Å:- Chain B: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, F.115, S.169, N.170, Q.191, Y.217, S.218, S.219, F.220, Q.223, S.224, E.227, F.240, A.257, I.272, P.273, R.274, N.276, R.280, Q.283, N.284, N.310
- Chain D: N.229
27 PLIP interactions:27 interactions with chain B- Hydrophobic interactions: B:W.24
- Hydrogen bonds: B:C.23, B:W.24, B:D.47, B:S.169, B:N.170, B:Q.191, B:S.218, B:F.220, B:S.224, B:S.224, B:E.227, B:R.274, B:N.276, B:R.280, B:N.284, B:N.284, B:N.310
- Water bridges: B:Y.52, B:S.219, B:S.219, B:S.224, B:E.227, B:E.227, B:R.280
- pi-Stacking: B:Y.217
- pi-Cation interactions: B:R.280
NAD.12: 29 residues within 4Å:- Chain B: N.229
- Chain D: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, F.115, S.169, N.170, Q.191, Y.217, S.218, S.219, F.220, Q.223, S.224, E.227, F.240, A.257, I.272, P.273, R.274, N.276, R.280, Q.283, N.284, N.310
26 PLIP interactions:26 interactions with chain D- Hydrophobic interactions: D:W.24
- Hydrogen bonds: D:C.23, D:W.24, D:D.47, D:D.47, D:Y.52, D:S.169, D:N.170, D:Q.191, D:S.218, D:F.220, D:S.224, D:S.224, D:E.227, D:R.274, D:N.276, D:R.280, D:N.284, D:N.284, D:N.310
- Water bridges: D:S.219, D:S.219, D:S.224, D:R.280
- pi-Stacking: D:Y.217
- pi-Cation interactions: D:R.280
NAD.18: 27 residues within 4Å:- Chain F: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, S.169, N.170, Q.191, Y.217, S.218, S.219, F.220, Q.223, S.224, E.227, F.240, A.257, I.272, P.273, R.274, N.276, R.280, N.284, N.310
- Chain H: N.229
30 PLIP interactions:30 interactions with chain F- Hydrophobic interactions: F:W.24
- Hydrogen bonds: F:C.23, F:W.24, F:D.47, F:S.169, F:N.170, F:Q.191, F:S.218, F:F.220, F:S.224, F:S.224, F:E.227, F:R.274, F:R.274, F:N.276, F:R.280, F:N.284, F:N.284, F:N.310
- Water bridges: F:W.24, F:K.25, F:Y.52, F:S.219, F:S.219, F:Q.223, F:S.224, F:S.224, F:R.280
- pi-Stacking: F:Y.217
- pi-Cation interactions: F:R.280
NAD.24: 27 residues within 4Å:- Chain F: N.229
- Chain H: G.22, C.23, W.24, D.47, Y.52, K.81, H.114, S.169, N.170, Q.191, Y.217, S.218, S.219, F.220, Q.223, S.224, E.227, F.240, A.257, I.272, P.273, R.274, N.276, R.280, N.284, N.310
31 PLIP interactions:31 interactions with chain H- Hydrophobic interactions: H:W.24
- Hydrogen bonds: H:C.23, H:W.24, H:D.47, H:D.47, H:Y.52, H:S.169, H:N.170, H:Q.191, H:S.218, H:F.220, H:S.224, H:S.224, H:E.227, H:R.274, H:R.274, H:N.276, H:R.280, H:N.284, H:N.284, H:N.310
- Water bridges: H:W.24, H:K.25, H:S.219, H:S.219, H:S.224, H:S.224, H:E.227, H:R.280
- pi-Stacking: H:Y.217
- pi-Cation interactions: H:R.280
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leitgeb, S. et al., Fine tuning of coenzyme specificity in family 2 aldo-keto reductases revealed by crystal structures of the Lys-274-->Arg mutant of Candida tenuis xylose reductase (AKR2B5) bound to NAD(+) and NADP(+). Febs Lett. (2005)
- Release Date
- 2005-02-01
- Peptides
- NAD(P)H-dependent D-xylose reductase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leitgeb, S. et al., Fine tuning of coenzyme specificity in family 2 aldo-keto reductases revealed by crystal structures of the Lys-274-->Arg mutant of Candida tenuis xylose reductase (AKR2B5) bound to NAD(+) and NADP(+). Febs Lett. (2005)
- Release Date
- 2005-02-01
- Peptides
- NAD(P)H-dependent D-xylose reductase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
CF
DG
CH
D