SMTL ID : 1yee.1

STRUCTURE OF A CATALYTIC ANTIBODY, IGG2A FAB FRAGMENT (D2.5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PNB: 4-NITRO-BENZYLPHOSPHONOBUTANOYL-GLYCINE(Non-covalent)

PNB.1: 15 residues within 4Å: Chain A: Y.31, Y.37, V.94, G.96, T.97, F.99, Y.101, F.103 Chain B: H.35, V.37, V.97, W.99, F.101, Y.108, W.113 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:V.94, A:Y.101, B:F.101 Hydrogen bonds: A:G.96, A:Y.101, A:Y.101, B:W.99 pi-Stacking: B:W.99, B:W.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charbonnier, J.B. et al., Structural convergence in the active sites of a family of catalytic antibodies. Science (1997)

Release Date

1997-10-15

Peptides

IGG2A FAB FRAGMENT (D2.5): A
IGG2A FAB FRAGMENT (D2.5): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IGG2A FAB FRAGMENT (D2.5)

IGG2A FAB FRAGMENT (D2.5)