SMTL ID : 1yfl.2 (1 other biounit)

T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

homo-dimer

Ligands

2 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 23 residues within 4Å: Chain B: A.16 Chain C: Y.7, G.9, N.10, K.11, L.31, F.32, C.33, G.34, G.35, L.36, S.37, V.38, D.50, I.51, Q.52, L.155, H.156, F.157, D.171, P.173, Y.181, F.184 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.32, C:Y.181 Hydrogen bonds: C:Y.7, C:G.9, C:G.9, C:K.11, C:F.32, C:G.35, C:L.36, C:I.51, C:H.156, C:F.157 pi-Stacking: C:F.32 SFG.2: 21 residues within 4Å: Chain B: A.8 Chain D: Y.7, G.9, N.10, K.11, F.32, C.33, G.34, G.35, L.36, S.37, D.50, I.51, Q.52, L.155, H.156, F.157, D.171, P.173, Y.181, F.184 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:F.32, D:Y.181 Hydrogen bonds: D:Y.7, D:G.9, D:G.9, D:K.11, D:F.32, D:G.35, D:L.36, D:S.37, D:I.51, D:H.156, D:F.157, D:D.171 pi-Stacking: D:F.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horton, J.R. et al., Transition from Nonspecific to Specific DNA Interactions along the Substrate-Recognition Pathway of Dam Methyltransferase. Cell(Cambridge,Mass.) (2005)

Release Date

2005-05-17

Peptides

DNA adenine methylase: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
D

D
E

DNA adenine methylase

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