SMTL ID : 1ygy.1

Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

6 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 8 residues within 4Å: Chain A: G.445, R.446, H.447 Chain D: K.439, D.449, L.450, R.451, R.501 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:K.439, D:D.449, D:D.449, D:R.451, A:H.447 Water bridges: D:K.439, D:Q.486 Salt bridges: D:K.439, D:R.451, D:R.501, A:H.447 TLA.2: 10 residues within 4Å: Chain B: R.446, H.447, S.488, E.489 Chain C: K.439, D.449, L.450, R.451, A.484, R.501 15 PLIP interactions: 10 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:K.439, C:D.449, C:D.449, C:D.449, C:R.451, C:R.451, B:H.447, B:S.488, B:E.489 Salt bridges: C:K.439, C:K.439, C:R.451, C:R.501, B:R.446, B:H.447 TLA.3: 4 residues within 4Å: Chain B: E.361, V.362, E.363, K.402 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.362, B:E.363, B:E.363, B:E.363 Salt bridges: B:K.402 TLA.4: 8 residues within 4Å: Chain B: K.439, D.449, L.450, R.451, R.501 Chain C: G.445, R.446, H.447 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:K.439, B:D.449, B:R.451, C:H.447 Water bridges: B:K.439, B:Q.486 Salt bridges: B:K.439, B:R.451, B:R.501, C:H.447 TLA.5: 10 residues within 4Å: Chain A: K.439, D.449, L.450, R.451, A.484, R.501 Chain D: R.446, H.447, S.488, E.489 14 PLIP interactions: 9 interactions with chain A, 5 interactions with chain D Hydrogen bonds: A:K.439, A:D.449, A:D.449, A:R.451, A:R.451, D:H.447, D:S.488, D:E.489 Salt bridges: A:K.439, A:K.439, A:R.451, A:R.501, D:R.446, D:H.447 TLA.6: 4 residues within 4Å: Chain D: E.361, V.362, E.363, K.402 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:V.362, D:E.363, D:E.363 Salt bridges: D:K.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dey, S. et al., Crystal Structure of Mycobacterium tuberculosis D-3-Phosphoglycerate Dehydrogenase: EXTREME ASYMMETRY IN A TETRAMER OF IDENTICAL SUBUNITS. J.Biol.Chem. (2005)

Release Date

2005-01-25

Peptides

D-3-phosphoglycerate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

D-3-phosphoglycerate dehydrogenase

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