- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: K.326, T.327, Y.328
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.327
- Water bridges: A:T.327, A:T.327, A:T.327, A:T.327, A:Y.328
SO4.3: 3 residues within 4Å:- Chain A: S.2, L.3, K.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.3
- Salt bridges: A:K.5
SO4.12: 3 residues within 4Å:- Chain B: K.326, T.327, Y.328
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.327
- Water bridges: B:Y.328, B:Y.328, B:Y.328, B:N.342, B:N.342
SO4.13: 3 residues within 4Å:- Chain B: S.311, V.312, N.313
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:V.312, B:N.313, B:N.313
- Water bridges: B:N.242, B:N.242, B:G.310
SO4.20: 3 residues within 4Å:- Chain C: K.326, T.327, Y.328
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:T.327
- Water bridges: C:T.327, C:T.327, C:T.327, C:T.327, C:Y.328, C:Y.328
SO4.28: 3 residues within 4Å:- Chain D: K.326, T.327, Y.328
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.327
SO4.29: 3 residues within 4Å:- Chain D: S.311, V.312, N.313
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:V.312, D:N.313, D:N.313
- Water bridges: D:N.242, D:N.242, D:Q.309, D:G.310
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.4: 7 residues within 4Å:- Chain A: D.401, T.402, F.403, W.425
- Chain B: Y.156, K.173, A.174
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Y.156, B:A.174, A:N.521
- Water bridges: B:Q.161
- Salt bridges: A:D.401
EPE.5: 8 residues within 4Å:- Chain A: Y.145, Y.156, K.173, A.174, I.176
- Chain B: D.401, T.402, W.425
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:Y.156, A:A.174
- Water bridges: A:Q.161, B:N.521, B:N.521, B:N.521
- Salt bridges: B:D.401
EPE.21: 7 residues within 4Å:- Chain C: Y.156, K.173, A.174
- Chain D: D.401, T.402, F.403, W.425
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain C- Water bridges: D:N.521, D:N.521, D:N.521, C:Q.161
- Salt bridges: D:D.401
- Hydrogen bonds: C:A.174
EPE.30: 8 residues within 4Å:- Chain C: D.401, T.402, W.425, N.521
- Chain D: Y.156, K.173, A.174, I.176
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:A.174, C:N.521
- Water bridges: D:Q.161, C:Q.405
- Salt bridges: C:D.401
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: S.60, L.61, L.62, D.63, D.91, Y.105, P.119
Ligand excluded by PLIPGOL.7: 8 residues within 4Å:- Chain A: D.15, F.32, W.74, A.75, D.128, T.207, R.288
- Ligands: GOL.8
Ligand excluded by PLIPGOL.8: 5 residues within 4Å:- Chain A: E.187, G.206, T.207, F.506
- Ligands: GOL.7
Ligand excluded by PLIPGOL.9: 8 residues within 4Å:- Chain A: H.238, P.240, R.241, L.278
- Chain C: I.183, P.232, T.235, W.237
Ligand excluded by PLIPGOL.10: 6 residues within 4Å:- Chain A: Y.209, Q.280, R.281, G.282, Y.283, D.498
Ligand excluded by PLIPGOL.14: 7 residues within 4Å:- Chain B: S.60, L.61, L.62, D.63, D.91, Y.105, P.119
Ligand excluded by PLIPGOL.15: 8 residues within 4Å:- Chain B: D.15, F.32, W.74, A.75, D.128, T.207, R.288
- Ligands: GOL.16
Ligand excluded by PLIPGOL.16: 6 residues within 4Å:- Chain B: Y.185, E.187, G.206, T.207, F.506
- Ligands: GOL.15
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain B: P.240, R.241, L.278
- Chain D: I.183, P.232, W.237
Ligand excluded by PLIPGOL.18: 6 residues within 4Å:- Chain B: Y.209, Q.280, R.281, G.282, Y.283, D.498
Ligand excluded by PLIPGOL.22: 7 residues within 4Å:- Chain C: S.60, L.61, L.62, D.63, D.91, Y.105, P.119
Ligand excluded by PLIPGOL.23: 8 residues within 4Å:- Chain C: D.15, F.32, W.74, A.75, D.128, T.207, R.288
- Ligands: GOL.24
Ligand excluded by PLIPGOL.24: 6 residues within 4Å:- Chain C: Y.185, E.187, G.206, T.207, F.506
- Ligands: GOL.23
Ligand excluded by PLIPGOL.25: 7 residues within 4Å:- Chain A: I.183, P.232, T.235, W.237
- Chain C: P.240, R.241, L.278
Ligand excluded by PLIPGOL.26: 6 residues within 4Å:- Chain C: Y.209, Q.280, R.281, G.282, Y.283, D.498
Ligand excluded by PLIPGOL.31: 7 residues within 4Å:- Chain D: S.60, L.61, L.62, D.63, D.91, Y.105, P.119
Ligand excluded by PLIPGOL.32: 8 residues within 4Å:- Chain D: D.15, F.32, W.74, A.75, D.128, T.207, R.288
- Ligands: GOL.33
Ligand excluded by PLIPGOL.33: 6 residues within 4Å:- Chain D: Y.185, E.187, G.206, T.207, F.506
- Ligands: GOL.32
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain B: I.183, P.232, T.235, W.237
- Chain D: P.240, R.241, L.278
Ligand excluded by PLIPGOL.35: 5 residues within 4Å:- Chain D: Q.280, R.281, G.282, Y.283, D.498
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teplyakov, A. et al., Crystal structure of beta-xylosidase from clostridium acetobutylicum. To be Published
- Release Date
- 2005-02-22
- Peptides
- Beta-xylosidase, family 43 glycosyl hydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 20 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teplyakov, A. et al., Crystal structure of beta-xylosidase from clostridium acetobutylicum. To be Published
- Release Date
- 2005-02-22
- Peptides
- Beta-xylosidase, family 43 glycosyl hydrolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D