SMTL ID : 1yid.1 (1 other biounit)

Crystal structure of tryptophanyl tRNA synthetase II from Deinococcus radiodurans in complex with ATP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: ATP.2 No protein-ligand interaction detected (PLIP)

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 13 residues within 4Å: Chain A: G.28, D.29, R.30, H.36, G.38, H.39, G.42, R.206, L.207, M.216, S.217, S.219 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.28, A:R.30, A:T.32, A:L.207, A:L.207, A:M.216, A:S.217, A:S.217, A:S.219, A:S.219, A:S.219, A:S.219 Salt bridges: A:R.30 pi-Cation interactions: A:R.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buddha, M.R. et al., Structures of tryptophanyl-tRNA synthetase II from Deinococcus radiodurans bound to ATP and tryptophan. Insight into subunit cooperativity and domain motions linked to catalysis. J.Biol.Chem. (2005)

Release Date

2005-08-02

Peptides

tryptophanyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

tryptophanyl-tRNA synthetase

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