SMTL ID : 1yiq.1

Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase ADHIIG from Pseudomonas putida HK5. Compariison to the other quinohemoprotein alcohol dehydrogenase ADHIIB found in the same microorganism.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.178, N.255, D.300 Ligands: PQQ.2, PGR.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.178, A:E.178, A:D.300

1 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 24 residues within 4Å: Chain A: E.63, C.109, C.110, V.113, R.115, T.160, G.175, G.176, A.177, E.178, T.235, W.237, N.255, D.300, K.327, F.385, W.386, D.390, W.391, F.477, G.541, A.542 Ligands: CA.1, PGR.4 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.542 Hydrogen bonds: A:R.115, A:T.160, A:G.176, A:A.177, A:E.178, A:E.178, A:T.235, A:K.327, A:A.542 Water bridges: A:C.110 Salt bridges: A:R.115, A:R.115 pi-Stacking: A:W.237, A:W.237, A:W.237

1 x HEC: HEME C(Covalent)

HEC.3: 23 residues within 4Å: Chain A: R.60, A.105, G.106, Y.605, C.606, Q.608, C.609, H.610, P.621, L.623, L.626, K.630, F.634, I.637, L.638, R.642, D.645, G.646, M.647, P.648, F.650, F.654, I.662 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:Y.605, A:P.621, A:P.621, A:L.623, A:L.626, A:F.634, A:F.634, A:I.637, A:L.638, A:L.638, A:D.645, A:M.647, A:F.650, A:F.650, A:F.654, A:I.662 Hydrogen bonds: A:D.645 Water bridges: A:R.642, A:R.642 Salt bridges: A:K.630, A:R.642, A:R.642 pi-Stacking: A:H.610, A:H.610, A:H.610 pi-Cation interactions: A:H.610 Metal complexes: A:H.610

3 x PGR: R-1,2-PROPANEDIOL(Non-covalent)

PGR.4: 10 residues within 4Å: Chain A: C.110, E.178, W.259, D.300, F.385, W.386, Y.430, A.542 Ligands: CA.1, PQQ.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.259, A:F.385 Water bridges: A:Y.430, A:A.542 PGR.5: 5 residues within 4Å: Chain A: E.441, I.595, E.596, Y.665, K.668 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.668 PGR.6: 7 residues within 4Å: Chain A: L.552, R.579, S.616, G.618, D.622, R.624, K.625 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.622, A:D.622, A:R.624 Water bridges: A:K.625

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toyama, H. et al., Molecular cloning and structural analysis of quinohemoprotein alcohol dehydrogenase ADH-IIG from Pseudomonas putida HK5. J.Mol.Biol. (2005)

Release Date

2005-08-16

Peptides

Quinohemoprotein alcohol dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Quinohemoprotein alcohol dehydrogenase