SMTL ID : 1yj3.1

Crystal structure analysis of product bound methionine aminopeptidase Type 1c from Mycobacterium Tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 7 residues within 4Å: Chain A: D.148, H.211, T.242, E.244, E.275 Ligands: CO.2, MET.4 5 PLIP interactions: 1 Ligand-Ligand interactions, 4 interactions with chain A Metal complexes: MET.4, A:D.148, A:H.211, A:E.244, A:E.275 CO.2: 6 residues within 4Å: Chain A: D.137, T.139, D.148, E.275 Ligands: CO.1, MET.4 5 PLIP interactions: 1 Ligand-Ligand interactions, 4 interactions with chain A Metal complexes: MET.4, A:D.137, A:D.137, A:D.148, A:E.275

1 x K: POTASSIUM ION(Non-covalent)

K.3: 5 residues within 4Å: Chain A: S.113, L.114, N.115, V.117, T.271 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.113, A:N.115, A:V.117, A:T.271, H2O.3

1 x MET: METHIONINE(Non-covalent)

MET.4: 15 residues within 4Å: Chain A: T.100, Y.103, F.106, C.111, D.137, T.139, D.148, H.211, F.217, H.218, E.244, W.261, E.275 Ligands: CO.1, CO.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.217 Hydrogen bonds: A:T.139 Salt bridges: A:H.211, A:H.218

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 3 residues within 4Å: Chain A: H.276, T.289, C.290 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Addlagatta, A. et al., Identification of an SH3-binding motif in a new class of methionine aminopeptidases from Mycobacterium tuberculosis suggests a mode of interaction with the ribosome. Biochemistry (2005)

Release Date

2005-07-05

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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