SMTL ID : 1ykf.1

NADP-DEPENDENT ALCOHOL DEHYDROGENASE FROM THERMOANAEROBIUM BROCKII

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.37, S.39, H.59, E.60, D.150, M.151 Ligands: NAP.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.37, A:H.59, A:D.150 ZN.3: 6 residues within 4Å: Chain B: C.37, S.39, H.59, E.60, D.150 Ligands: NAP.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.37, B:H.59, B:D.150 ZN.5: 5 residues within 4Å: Chain C: C.37, S.39, H.59, D.150 Ligands: NAP.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.37, C:S.39, C:H.59, C:D.150 ZN.7: 5 residues within 4Å: Chain D: C.37, S.39, H.59, D.150 Ligands: NAP.8 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.37, D:S.39, D:H.59, D:D.150

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 22 residues within 4Å: Chain A: T.38, S.39, H.42, D.150, T.154, G.174, I.175, G.176, P.177, V.178, S.199, R.200, Y.218, I.223, A.242, G.243, G.244, I.248, V.265, N.266, Y.267 Ligands: ZN.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:T.154, A:V.178 Hydrogen bonds: A:T.38, A:S.39, A:H.42, A:I.175, A:I.175, A:G.176, A:V.178, A:G.179, A:S.199, A:S.199, A:R.200, A:N.266, A:Y.267 Salt bridges: A:R.200 pi-Stacking: A:Y.218 NAP.4: 24 residues within 4Å: Chain B: T.38, S.39, H.42, H.59, D.150, T.154, G.174, I.175, G.176, P.177, V.178, G.198, S.199, R.200, Y.218, I.223, A.242, G.243, G.244, I.248, V.265, N.266, Y.267 Ligands: ZN.3 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.154, B:V.178 Hydrogen bonds: B:T.38, B:S.39, B:H.42, B:I.175, B:I.175, B:V.178, B:G.179, B:S.199, B:S.199, B:R.200, B:N.266, B:Y.267 Salt bridges: B:R.200 pi-Stacking: B:Y.218 NAP.6: 24 residues within 4Å: Chain C: T.38, S.39, H.42, H.59, D.150, T.154, G.174, I.175, G.176, P.177, V.178, G.179, G.198, S.199, R.200, Y.218, I.223, A.242, G.243, I.248, V.265, N.266, Y.267 Ligands: ZN.5 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:T.154, C:V.178 Hydrogen bonds: C:T.38, C:S.39, C:I.175, C:I.175, C:G.176, C:V.178, C:G.179, C:S.199, C:S.199, C:R.200, C:Y.218, C:N.266, C:Y.267 Salt bridges: C:R.200 pi-Stacking: C:Y.218 NAP.8: 23 residues within 4Å: Chain D: T.38, S.39, H.42, D.150, T.154, G.174, I.175, G.176, P.177, V.178, G.179, G.198, S.199, R.200, Y.218, I.223, A.242, G.243, I.248, V.265, N.266, Y.267 Ligands: ZN.7 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:T.154, D:V.178 Hydrogen bonds: D:T.38, D:I.175, D:I.175, D:G.176, D:G.176, D:V.178, D:G.179, D:S.199, D:S.199, D:R.200, D:N.266, D:Y.267 Salt bridges: D:R.200 pi-Stacking: D:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korkhin, Y. et al., NADP-dependent bacterial alcohol dehydrogenases: crystal structure, cofactor-binding and cofactor specificity of the ADHs of Clostridium beijerinckii and Thermoanaerobacter brockii. J.Mol.Biol. (1998)

Release Date

1998-01-14

Peptides

NADP-DEPENDENT ALCOHOL DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NADP-DEPENDENT ALCOHOL DEHYDROGENASE

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