SMTL ID : 1yli.1

Crystal structure of HI0827, a hexameric broad specificity acyl-coenzyme A thioesterase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 1 residues within 4Å: Chain D: H.55 No protein-ligand interaction detected (PLIP) CA.2: 1 residues within 4Å: Chain A: Q.41 No protein-ligand interaction detected (PLIP) CA.4: 1 residues within 4Å: Ligands: COA.3 No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain E: H.55 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain F: H.55 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain C: Q.41 No protein-ligand interaction detected (PLIP) CA.12: 1 residues within 4Å: Ligands: COA.11 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain A: H.55 No protein-ligand interaction detected (PLIP) CA.17: 1 residues within 4Å: Chain B: H.55 No protein-ligand interaction detected (PLIP) CA.18: 1 residues within 4Å: Chain E: Q.41 No protein-ligand interaction detected (PLIP) CA.20: 1 residues within 4Å: Ligands: COA.19 No protein-ligand interaction detected (PLIP) CA.21: 1 residues within 4Å: Chain C: H.55 No protein-ligand interaction detected (PLIP)

6 x COA: COENZYME A(Non-covalent)

COA.3: 22 residues within 4Å: Chain A: V.59, T.60, V.61, A.62, G.88, R.89, S.90, S.91, T.120, V.122, G.128, S.130 Chain B: I.33, F.34, G.35, N.67, F.68, I.69, K.70, P.71, V.114 Ligands: CA.4 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.61, A:V.122 Hydrogen bonds: A:T.60, A:T.60, A:R.89, A:R.89, A:S.90, A:S.91, A:S.91, A:S.130, B:N.67, B:F.68 Water bridges: A:T.60, A:S.130 COA.6: 22 residues within 4Å: Chain A: I.33, F.34, G.35, I.38, N.67, F.68, I.69, K.70, P.71, V.114 Chain B: V.59, T.60, V.61, A.62, G.88, R.89, S.90, S.91, T.120, V.122, G.128, S.130 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:N.67, A:F.68, B:T.60, B:R.89, B:R.89, B:S.90, B:S.91, B:S.130 Water bridges: A:G.35 Hydrophobic interactions: B:V.61, B:V.122 Salt bridges: B:R.89 COA.11: 22 residues within 4Å: Chain C: V.59, T.60, V.61, A.62, G.88, R.89, S.90, S.91, T.120, V.122, G.128, S.130 Chain D: I.33, F.34, G.35, N.67, F.68, I.69, K.70, P.71, V.114 Ligands: CA.12 14 PLIP interactions: 2 interactions with chain D, 12 interactions with chain C Hydrogen bonds: D:N.67, D:F.68, C:T.60, C:T.60, C:R.89, C:R.89, C:S.90, C:S.91, C:S.91, C:S.130 Hydrophobic interactions: C:V.61, C:V.122 Water bridges: C:T.60, C:S.130 COA.14: 22 residues within 4Å: Chain C: I.33, F.34, G.35, I.38, N.67, F.68, I.69, K.70, P.71, V.114 Chain D: V.59, T.60, V.61, A.62, G.88, R.89, S.90, S.91, T.120, V.122, G.128, S.130 12 PLIP interactions: 9 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:V.61, D:V.122 Hydrogen bonds: D:T.60, D:R.89, D:R.89, D:S.90, D:S.91, D:S.130, C:N.67, C:F.68 Salt bridges: D:R.89 Water bridges: C:G.35 COA.19: 22 residues within 4Å: Chain E: V.59, T.60, V.61, A.62, G.88, R.89, S.90, S.91, T.120, V.122, G.128, S.130 Chain F: I.33, F.34, G.35, N.67, F.68, I.69, K.70, P.71, V.114 Ligands: CA.20 14 PLIP interactions: 12 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:V.61, E:V.122 Hydrogen bonds: E:T.60, E:T.60, E:R.89, E:R.89, E:S.90, E:S.91, E:S.91, E:S.130, F:N.67, F:F.68 Water bridges: E:T.60, E:S.130 COA.22: 22 residues within 4Å: Chain E: I.33, F.34, G.35, I.38, N.67, F.68, I.69, K.70, P.71, V.114 Chain F: V.59, T.60, V.61, A.62, G.88, R.89, S.90, S.91, T.120, V.122, G.128, S.130 12 PLIP interactions: 9 interactions with chain F, 3 interactions with chain E Hydrophobic interactions: F:V.61, F:V.122 Hydrogen bonds: F:T.60, F:R.89, F:R.89, F:S.90, F:S.91, F:S.130, E:N.67, E:F.68 Salt bridges: F:R.89 Water bridges: E:G.35

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain B: L.18, T.20, Q.41 Chain E: T.20, L.21 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain B Hydrogen bonds: E:L.21, E:L.21, B:Q.41, B:Q.41 GOL.8: 6 residues within 4Å: Chain B: V.15, L.49, E.52, K.143, A.144, L.147 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.52 Water bridges: B:V.15, B:E.52, B:A.144 GOL.15: 5 residues within 4Å: Chain A: T.20, L.21 Chain D: L.18, T.20, Q.41 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:T.20, D:Q.41, D:Q.41, A:L.21, A:L.21 GOL.16: 6 residues within 4Å: Chain D: V.15, L.49, E.52, K.143, A.144, L.147 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.52 Water bridges: D:V.15, D:A.144 GOL.23: 5 residues within 4Å: Chain C: T.20, L.21 Chain F: L.18, T.20, Q.41 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain C Hydrogen bonds: F:Q.41, F:Q.41, C:L.21, C:L.21 GOL.24: 6 residues within 4Å: Chain F: V.15, L.49, E.52, K.143, A.144, L.147 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.52 Water bridges: F:V.15, F:A.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willis, M.A. et al., STRUCTURE OF HI0827, A THIOESTERASE ACTING ON SHORT-CHAIN ACYL-COA COMPOUNDS. To be Published

Release Date

2005-02-01

Peptides

Putative acyl-CoA thioester hydrolase HI0827: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Putative acyl-CoA thioester hydrolase HI0827