Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 1ylu.1
The structure of E. coli nitroreductase with bound acetate, crystal form 2
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
3 x
ACT
:
ACETATE ION
(Non-functional Binders)
ACT.1:
4 residues within 4Å:
Chain A:
S.40
,
T.41
,
F.124
Ligands:
FMN.5
4
PLIP interactions
:
3 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:T.41
,
A:F.124
Hydrogen bonds:
A:T.41
Salt bridges:
B:K.14
ACT.2:
4 residues within 4Å:
Chain A:
E.54
,
K.57
,
A.58
,
L.76
3
PLIP interactions
:
3 interactions with chain A
Hydrophobic interactions:
A:L.76
Hydrogen bonds:
A:A.58
,
A:L.76
ACT.4:
4 residues within 4Å:
Chain B:
S.40
,
T.41
,
F.124
Ligands:
FMN.3
4
PLIP interactions
:
3 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:T.41
,
B:F.124
Hydrogen bonds:
B:T.41
Salt bridges:
A:K.14
2 x
FMN
:
FLAVIN MONONUCLEOTIDE
(Non-covalent)
FMN.3:
23 residues within 4Å:
Chain A:
R.10
,
H.11
,
S.12
,
K.14
,
N.71
,
K.74
,
Y.144
,
V.162
,
P.163
,
I.164
,
E.165
,
G.166
,
N.200
,
K.205
,
R.207
Chain B:
P.38
,
S.39
,
S.40
,
T.41
,
N.42
,
Q.142
,
L.145
Ligands:
ACT.4
27
PLIP interactions
:
20 interactions with chain A
,
7 interactions with chain B
Hydrophobic interactions:
A:Y.144
,
A:P.163
,
B:L.145
Hydrogen bonds:
A:S.12
,
A:S.12
,
A:S.12
,
A:S.12
,
A:K.14
,
A:N.71
,
A:N.71
,
A:K.74
,
A:E.165
,
A:G.166
,
A:N.200
,
B:S.39
,
B:T.41
,
B:N.42
Water bridges:
A:K.14
,
A:K.205
,
A:K.205
,
A:R.207
,
B:T.41
,
B:E.102
,
B:R.121
Salt bridges:
A:R.10
,
A:K.205
,
A:R.207
FMN.5:
22 residues within 4Å:
Chain A:
P.38
,
S.39
,
S.40
,
N.42
,
Q.142
,
L.145
Chain B:
R.10
,
H.11
,
S.12
,
K.14
,
N.71
,
K.74
,
Y.144
,
V.162
,
P.163
,
I.164
,
E.165
,
G.166
,
N.200
,
K.205
,
R.207
Ligands:
ACT.1
26
PLIP interactions
:
20 interactions with chain B
,
6 interactions with chain A
Hydrophobic interactions:
B:Y.144
,
B:P.163
,
B:P.163
,
A:L.145
Hydrogen bonds:
B:S.12
,
B:S.12
,
B:S.12
,
B:S.12
,
B:K.14
,
B:N.71
,
B:N.71
,
B:K.74
,
B:E.165
,
B:G.166
,
B:N.200
,
A:S.39
,
A:T.41
Water bridges:
B:K.14
,
B:K.205
,
B:R.207
,
A:T.41
,
A:E.102
,
A:R.107
Salt bridges:
B:R.10
,
B:K.205
,
B:R.207
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Race, P.R. et al., Structural and mechanistic studies of Escherichia coli nitroreductase with the antibiotic nitrofurazone. Reversed binding orientations in different redox states of the enzyme. J.Biol.Chem. (2005)
Release Date
2005-02-08
Peptides
Oxygen-insensitive NAD(P)H nitroreductase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Oxygen-insensitive NAD(P)H nitroreductase
Toggle Identical (AB)
Related Entries With Identical Sequence
1ds7.1
|
1icr.1
|
1icu.1
|
1icu.2
|
1icv.1
|
1icv.2
|
1idt.1
|
1oo5.1
|
1oo6.1
|
1oon.1
|
1ooq.1
|
1yki.1
|
1yki.2
|
1ylr.1
|
7x32.1
|
7x32.2
|
7x32.3
|
7x32.4
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme