SMTL ID : 1ymg.1

The Channel Architecture of Aquaporin O at 2.2 Angstrom Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-tetramer

Ligands

8 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.1: 5 residues within 4Å: Chain A: F.198, N.200, H.201, W.202, W.205 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.205 Hydrogen bonds: A:N.200, A:N.200, A:H.201, A:W.202 BNG.2: 7 residues within 4Å: Chain A: S.126, G.128, Q.129, I.132, F.136, L.214 Chain D: S.106 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.132, A:F.136, A:L.214 Hydrogen bonds: A:S.126 Water bridges: A:Q.129 BNG.3: 5 residues within 4Å: Chain B: F.198, N.200, H.201, W.202, W.205 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.205 Hydrogen bonds: B:N.200, B:N.200, B:H.201, B:W.202 BNG.4: 7 residues within 4Å: Chain B: S.126, G.128, Q.129, I.132, F.136, L.214 Chain C: S.106 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.132, B:F.136, B:L.214 Hydrogen bonds: B:S.126 Water bridges: B:Q.129 BNG.5: 5 residues within 4Å: Chain C: F.198, N.200, H.201, W.202, W.205 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.205 Hydrogen bonds: C:N.200, C:N.200, C:H.201, C:W.202 BNG.6: 7 residues within 4Å: Chain A: S.106 Chain C: S.126, G.128, Q.129, I.132, F.136, L.214 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:I.132, C:F.136, C:L.214 Hydrogen bonds: C:S.126 Water bridges: C:Q.129 BNG.7: 5 residues within 4Å: Chain D: F.198, N.200, H.201, W.202, W.205 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:W.205 Hydrogen bonds: D:N.200, D:N.200, D:H.201, D:W.202 BNG.8: 7 residues within 4Å: Chain B: S.106 Chain D: S.126, G.128, Q.129, I.132, F.136, L.214 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:I.132, D:F.136, D:L.214 Hydrogen bonds: D:S.126 Water bridges: D:Q.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harries, W.E.C. et al., The Channel Architecture of Aquaporin 0 at a 2.2-A Resolution. Proc.Natl.Acad.Sci.USA (2004)

Release Date

2005-02-08

Peptides

Lens fiber major intrinsic protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Membrane

We predict this structure to be a membrane protein.
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Lens fiber major intrinsic protein

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