SMTL ID : 1ynu.2 (1 other biounit)

Crystal structure of apple ACC synthase in complex with L-vinylglycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.113, D.290 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.113, A:D.290, H2O.27, H2O.82, H2O.118 NI.2: 3 residues within 4Å: Chain A: D.84, H.86 Ligands: TRS.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.84, A:D.84, A:H.86, H2O.111

1 x K: POTASSIUM ION(Non-covalent)

K.3: 2 residues within 4Å: Chain A: A.118, L.304 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.304, H2O.26

1 x PY4: 2-[O-PHOSPHONOPYRIDOXYL]-AMINO- BUTYRIC ACID(Covalent)

PY4.4: 20 residues within 4Å: Chain A: Y.19, L.45, A.46, E.47, G.119, A.120, T.121, N.124, Y.145, F.148, T.198, N.202, D.230, I.232, Y.233, S.270, S.272, K.273, R.281, R.407 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.145, A:F.148, A:K.273 Hydrogen bonds: A:Y.19, A:A.46, A:A.120, A:T.121, A:T.121, A:N.124, A:N.202, A:S.270, A:S.272, A:S.272, A:K.273 Salt bridges: A:K.273, A:R.281, A:R.407

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 5 residues within 4Å: Chain A: Q.83, D.84, Y.85, H.86 Ligands: NI.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Capitani, G. et al., Structure of ACC synthase inactivated by the mechanism-based inhibitor L-vinylglycine. Febs Lett. (2005)

Release Date

2005-05-03

Peptides

1-aminocyclopropane-1-carboxylate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-aminocyclopropane-1-carboxylate synthase

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