SMTL ID : 1ynw.1

Crystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain C: C.9, V.11, C.12, C.26, C.29 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.9, C:C.12, C:C.26, C:C.29 ZN.2: 5 residues within 4Å: Chain C: C.45, D.50, C.51, C.61, C.64 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.45, C:C.51, C:C.61, C:C.64 ZN.3: 5 residues within 4Å: Chain D: C.6, I.8, C.9, C.23, C.26 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.6, D:C.9, D:C.23, D:C.26 ZN.4: 5 residues within 4Å: Chain D: C.42, R.43, C.48, C.58, C.61 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.42, D:C.48, D:C.58, D:C.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaffer, P.L. et al., Structural analysis of RXR-VDR interactions on DR3 DNA. J.Steroid Biochem.Mol.Biol. (2004)

Release Date

2005-02-15

Peptides

Vitamin D3 Receptor: C
Retinoic acid receptor RXR-alpha: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Vitamin D3 Receptor

Retinoic acid receptor RXR-alpha