- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x RIB: alpha-D-ribofuranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 6 residues within 4Å:- Chain A: D.21, D.26, N.50, T.135, D.252
- Ligands: RIB.1
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.21, A:D.26, A:T.135, A:D.252, H2O.1
CA.4: 6 residues within 4Å:- Chain B: D.21, D.26, N.50, T.135, D.252
- Ligands: RIB.3
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.21, B:D.26, B:T.135, B:D.252, H2O.9
CA.6: 6 residues within 4Å:- Chain C: D.21, D.26, N.50, T.135, D.252
- Ligands: RIB.5
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.21, C:D.26, C:T.135, C:D.252, H2O.17
CA.8: 6 residues within 4Å:- Chain D: D.21, D.26, N.50, T.135, D.252
- Ligands: RIB.7
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.21, D:D.26, D:T.135, D:D.252, H2O.25
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Muzzolini, L. et al., Crystal structure of the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose. To be Published
- Release Date
- 2006-01-17
- Peptides
- Hypothetical protein ybeK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.78 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x RIB: alpha-D-ribofuranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Muzzolini, L. et al., Crystal structure of the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose. To be Published
- Release Date
- 2006-01-17
- Peptides
- Hypothetical protein ybeK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A