SMTL ID : 1yp6.1

Van der Waals Interactions Dominate Hydrophobic Association in a Protein Binding Site Occluded From Solvent Water

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: E.151 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.151, A:E.151, H2O.8, H2O.9, H2O.9 CD.2: 1 residues within 4Å: Chain A: E.25 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.25, A:E.25, H2O.10, H2O.10

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: E.152 Ligand excluded by PLIP

1 x PRZ: 2-ISOBUTYL-3-METHOXYPYRAZINE(Non-covalent)

PRZ.4: 10 residues within 4Å: Chain A: L.52, L.54, L.66, F.68, F.102, A.115, L.117, L.128, G.130, F.132 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.54, A:F.102, A:F.102, A:A.115, A:F.132, A:F.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barratt, E. et al., Van der Waals Interactions Dominate Ligand-Protein Association in a Protein Binding Site Occluded from Solvent Water. J.Am.Chem.Soc. (2005)

Release Date

2005-08-30

Peptides

MAJOR URINARY PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAJOR URINARY PROTEIN 1

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