SMTL ID : 1ypz.1

Immune receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 5 residues within 4Å: Chain E: N.133 Chain F: T.133, I.134, L.136, F.224 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.4: 7 residues within 4Å: Chain G: N.133 Chain H: T.133, I.134, F.135, L.136, F.224, P.226 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain E: E.5, R.22, N.24, Y.70 Chain G: D.18 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:D.18 NAG-NAG.3: 3 residues within 4Å: Chain F: T.185, N.186, D.187 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.5: 3 residues within 4Å: Chain E: G.16 Chain G: E.5, N.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, E.J. et al., Structure of a gammadelta T cell receptor in complex with the nonclassical MHC T22. Science (2005)

Release Date

2005-04-12

Peptides

H2-T22 protein: AC
Beta-2-microglobulin: BD
T cell receptor delta: EG
T-cell receptor gamma chain: FH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

G
G

F
F

H
H

H2-T22 protein

Beta-2-microglobulin

T cell receptor delta

T-cell receptor gamma chain

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