SMTL ID : 1yqt.1

RNase-L Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.326, Q.354, E.427 Ligands: ADP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.326, H2O.1, H2O.1, H2O.1 MG.2: 4 residues within 4Å: Chain A: S.61, Q.113, E.184 Ligands: ADP.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.61, H2O.1, H2O.1, H2O.1

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 12 residues within 4Å: Chain A: Y.297, F.300, P.320, N.321, G.322, I.323, G.324, K.325, T.326, T.327, G.480 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.321, A:G.322, A:G.322, A:I.323, A:G.324, A:K.325, A:T.326, A:T.327, A:T.327, A:G.480 Water bridges: A:T.326, A:Q.354, A:Q.354, A:Q.354 Salt bridges: A:K.325 pi-Stacking: A:Y.297, A:Y.297 ADP.4: 13 residues within 4Å: Chain A: Y.31, F.36, P.55, N.56, G.57, T.58, G.59, K.60, S.61, T.62, K.65, G.236 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:P.55, A:N.56, A:G.57, A:G.57, A:T.58, A:T.58, A:G.59, A:K.60, A:S.61, A:T.62, A:K.65 Water bridges: A:K.65, A:Q.113, A:Q.113 Salt bridges: A:K.60 pi-Stacking: A:Y.31, A:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karcher, A. et al., X-ray structure of RLI, an essential twin cassette ABC ATPase involved in ribosome biogenesis and HIV capsid assembly. Structure (2005)

Release Date

2005-04-19

Peptides

RNase l inhibitor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNase l inhibitor