SMTL ID : 1yrr.1

Crystal Structure Of The N-Acetylglucosamine-6-Phosphate Deacetylase From Escherichia Coli K12 at 2.0 A Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: Q.59, E.131, H.195, H.216, D.273 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.59, A:E.131 Water bridges: A:N.61, A:H.216 Salt bridges: A:H.195, A:H.216 PO4.5: 6 residues within 4Å: Chain B: Q.59, N.61, E.131, H.195, H.216, D.273 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.59, B:N.61, B:D.273, B:D.273 Salt bridges: B:H.195, B:H.216 PO4.6: 5 residues within 4Å: Chain C: Q.59, E.131, H.195, H.216, D.273 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.59, C:E.131 Water bridges: C:N.61, C:H.216 Salt bridges: C:H.195, C:H.216 PO4.10: 6 residues within 4Å: Chain D: Q.59, N.61, E.131, H.195, H.216, D.273 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Q.59, D:N.61, D:D.273, D:D.273 Salt bridges: D:H.195, D:H.216

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: T.225, G.226, R.227, E.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.225, A:G.226, A:R.227, A:R.227, A:E.228 GOL.3: 6 residues within 4Å: Chain A: D.253, Y.254, A.255, R.258, H.323 Chain B: L.200 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.255, A:R.258, A:R.258 Water bridges: A:D.253, A:H.323, A:H.323 GOL.4: 4 residues within 4Å: Chain A: K.261, R.262, G.265, E.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.262 Water bridges: A:K.261 GOL.7: 4 residues within 4Å: Chain C: T.225, G.226, R.227, E.228 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.225, C:G.226, C:R.227, C:R.227, C:E.228 GOL.8: 6 residues within 4Å: Chain C: D.253, Y.254, A.255, R.258, H.323 Chain D: L.200 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:A.255, C:R.258, C:R.258 Water bridges: C:D.253, C:H.323, C:H.323 GOL.9: 4 residues within 4Å: Chain C: K.261, R.262, G.265, E.330 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.262 Water bridges: C:K.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferreira, F.M. et al., Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli. J.Mol.Biol. (2006)

Release Date

2006-03-21

Peptides

N-acetylglucosamine-6-phosphate deacetylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

N-acetylglucosamine-6-phosphate deacetylase

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