SMTL ID : 1ys4.1 (1 other biounit)

Structure of Aspartate-Semialdehyde Dehydrogenase from Methanococcus jannaschii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: G.15, A.16, T.17, G.18, S.19, V.20, A.41, S.42, S.45, T.74, A.90, L.91, P.92, L.95, F.99, N.113, S.187, G.188, A.189, G.190, Y.191, N.333, T.334, A.338 Ligands: MLA.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.20, A:A.338 Hydrogen bonds: A:G.15, A:T.17, A:T.17, A:T.17, A:G.18, A:S.19, A:S.42, A:S.42, A:S.45, A:G.188, A:Y.191, A:N.333 Water bridges: A:V.20, A:N.113 NAP.4: 21 residues within 4Å: Chain B: G.15, T.17, G.18, S.19, V.20, A.41, S.42, S.45, T.74, A.90, L.91, P.92, L.95, N.113, G.188, A.189, G.190, N.333, T.334, A.338 Ligands: MLA.5 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.20, B:A.338 Hydrogen bonds: B:G.15, B:T.17, B:T.17, B:T.17, B:G.18, B:S.19, B:S.42, B:S.42, B:S.45, B:S.45, B:T.74, B:T.334 Water bridges: B:V.20, B:N.113, B:Y.191, B:T.334

4 x MLA: MALONIC ACID(Non-covalent)

MLA.2: 8 residues within 4Å: Chain A: F.206, I.207, K.208, N.209, E.210, E.211, E.212 Chain B: R.316 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.206 Hydrogen bonds: A:N.209, A:E.210, A:E.211, A:E.212 Water bridges: A:E.212, B:R.316, B:R.316 MLA.3: 6 residues within 4Å: Chain A: S.115, R.118, N.156, C.157, K.213 Ligands: NAP.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.115, A:R.118, A:N.156, A:C.157 Water bridges: A:S.93, A:S.115, A:G.188, A:E.210 Salt bridges: A:R.118, A:K.213 MLA.5: 6 residues within 4Å: Chain B: N.113, R.118, N.156, C.157, K.213 Ligands: NAP.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.156, B:C.157 Water bridges: B:N.113, B:S.115, B:E.210 Salt bridges: B:R.118, B:K.213, B:K.213 MLA.6: 8 residues within 4Å: Chain A: R.316 Chain B: F.206, I.207, K.208, N.209, E.210, E.211, E.212 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.206 Hydrogen bonds: B:I.207, B:N.209, B:N.209, B:E.210, B:E.211, B:E.212 Water bridges: A:R.316, A:R.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faehnle, C.R. et al., A New Branch in the Family: Structure of Aspartate-beta-semialdehyde Dehydrogenase from Methanococcus jannaschii. J.Mol.Biol. (2005)

Release Date

2005-11-01

Peptides

Aspartate-semialdehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate-semialdehyde dehydrogenase

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