SMTL ID : 1ysj.1

Crystal Structure of Bacillus Subtilis YXEP Protein (APC1829), a Dinuclear Metal Binding Peptidase from M20 Family

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 6 residues within 4Å: Chain A: C.122, H.124, E.157, E.158, H.182 Ligands: NI.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.122, A:H.124, A:H.182, H2O.1, H2O.5 NI.2: 4 residues within 4Å: Chain A: C.122, E.158, H.374 Ligands: NI.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.122, A:E.158, A:H.374, H2O.1, H2O.1 NI.3: 6 residues within 4Å: Chain B: C.122, H.124, E.157, E.158, H.182 Ligands: NI.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.122, B:H.124, B:H.182, H2O.6, H2O.10 NI.4: 4 residues within 4Å: Chain B: C.122, E.158, H.374 Ligands: NI.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.122, B:E.158, B:H.374, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Structure of Bacillus Subtilis YXEP Protein, a Dinuclear Metal Binding Peptidase from M20 Family. To be Published

Release Date

2005-03-22

Peptides

protein yxeP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

protein yxeP