SMTL ID : 1yt5.1 (7 other biounits)

Crystal structure of NAD kinase from Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.113, N.114 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.114, A:N.114 SO4.2: 4 residues within 4Å: Chain A: N.114, H.115, L.116 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.116, A:L.116 SO4.3: 5 residues within 4Å: Chain A: L.112, N.114, H.115 Ligands: SO4.1, SO4.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.115 SO4.4: 3 residues within 4Å: Chain A: R.248, R.255, R.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.256 Salt bridges: A:R.248 SO4.5: 4 residues within 4Å: Chain A: Q.206, R.207, D.208, K.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.208 Salt bridges: A:K.222 SO4.6: 7 residues within 4Å: Chain A: G.50, D.51, G.52, R.74, L.75, G.76, K.250 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.51, A:G.52, A:R.74 Water bridges: A:T.53 Salt bridges: A:K.250 SO4.7: 3 residues within 4Å: Chain B: G.113, N.114 Ligands: SO4.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.114, B:N.114, B:N.114 SO4.8: 5 residues within 4Å: Chain B: G.50, D.51, K.71, R.74, K.250 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.51, B:D.51, B:R.74 Salt bridges: B:K.71, B:K.250 SO4.9: 4 residues within 4Å: Chain B: N.114, H.115 Ligands: SO4.7, SO4.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.114 Salt bridges: B:H.115 SO4.10: 5 residues within 4Å: Chain A: L.127, L.217 Chain B: D.126, L.127, S.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.126, B:L.127, B:S.128 SO4.11: 3 residues within 4Å: Chain B: R.207, D.208, K.222 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.208, B:D.208, B:D.208 Salt bridges: B:K.222 SO4.12: 3 residues within 4Å: Chain B: H.115, L.116 Ligands: SO4.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.116 SO4.13: 4 residues within 4Å: Chain B: R.248, D.249, R.255, R.256 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.256 Salt bridges: B:R.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oganesyan, V. et al., Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution. Acta Crystallogr.,Sect.F (2005)

Release Date

2005-04-05

Peptides

inorganic polyphosphate/ATP-NAD kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

inorganic polyphosphate/ATP-NAD kinase

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