SMTL ID : 1yte.1

Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum, phosphoribosylpyrophosphate bound structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-hexamer

Ligands

6 x PCP: 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE(Non-covalent)

PCP.1: 10 residues within 4Å: Chain A: R.148, P.245, S.246, G.277, G.278, G.298, T.299 Chain F: S.51, D.308, A.310 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:S.246, A:S.246, A:G.277, A:G.278, A:L.279, A:G.298, A:T.299, A:T.299, A:T.299, F:S.51 Water bridges: A:S.247, A:S.300 Salt bridges: F:K.326, F:K.326 PCP.2: 10 residues within 4Å: Chain B: R.148, P.245, S.246, G.277, G.278, G.298, T.299 Chain E: S.51, D.308, A.310 14 PLIP interactions: 3 interactions with chain E, 11 interactions with chain B Hydrogen bonds: E:S.51, B:S.246, B:S.246, B:G.277, B:G.278, B:L.279, B:G.298, B:T.299, B:T.299, B:T.299 Salt bridges: E:K.326, E:K.326 Water bridges: B:S.247, B:S.300 PCP.3: 10 residues within 4Å: Chain C: R.148, P.245, S.246, G.277, G.278, G.298, T.299 Chain D: S.51, D.308, A.310 14 PLIP interactions: 11 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:S.246, C:S.246, C:G.277, C:G.278, C:L.279, C:G.298, C:T.299, C:T.299, C:T.299, D:S.51 Water bridges: C:S.247, C:S.300 Salt bridges: D:K.326, D:K.326 PCP.4: 10 residues within 4Å: Chain C: S.51, D.308, A.310 Chain D: R.148, P.245, S.246, G.277, G.278, G.298, T.299 14 PLIP interactions: 10 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:S.246, D:S.246, D:G.277, D:G.278, D:L.279, D:G.298, D:T.299, D:T.299, C:S.51, C:D.308 Water bridges: D:S.247, D:S.300 Salt bridges: C:K.326, C:K.326 PCP.5: 10 residues within 4Å: Chain B: S.51, D.308, A.310 Chain E: R.148, P.245, S.246, G.277, G.278, G.298, T.299 14 PLIP interactions: 10 interactions with chain E, 4 interactions with chain B Hydrogen bonds: E:S.246, E:S.246, E:G.277, E:G.278, E:L.279, E:G.298, E:T.299, E:T.299, B:S.51, B:D.308 Water bridges: E:S.247, E:S.300 Salt bridges: B:K.326, B:K.326 PCP.6: 10 residues within 4Å: Chain A: S.51, D.308, A.310 Chain F: R.148, P.245, S.246, G.277, G.278, G.298, T.299 14 PLIP interactions: 10 interactions with chain F, 4 interactions with chain A Hydrogen bonds: F:S.246, F:S.246, F:G.277, F:G.278, F:L.279, F:G.298, F:T.299, F:T.299, A:S.51, A:D.308 Water bridges: F:S.247, F:S.300 Salt bridges: A:K.326, A:K.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, D.H. et al., Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum. J.Biol.Chem. (2005)

Release Date

2005-03-08

Peptides

nicotinate phosphoribosyltransferase from Thermoplasma acidophilum: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

nicotinate phosphoribosyltransferase from Thermoplasma acidophilum

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