SMTL ID : 1yu0.1

Major Tropism Determinant P1 Variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-trimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.312, F.313 Chain B: E.312, F.313 Chain C: E.312, F.313 Ligands: CA.3, CA.5 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C Metal complexes: A:E.312, A:F.313, B:E.312, B:F.313, C:E.312, C:F.313 CA.2: 8 residues within 4Å: Chain A: N.254, E.312 Chain B: N.254, E.312 Chain C: N.254, E.312 Ligands: CA.4, CA.6 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: C:E.312, A:E.312, B:E.312, H2O.12, H2O.31, H2O.49 CA.3: 8 residues within 4Å: Chain A: E.312, F.313 Chain B: E.312, F.313 Chain C: E.312, F.313 Ligands: CA.1, CA.5 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C Metal complexes: A:E.312, A:F.313, B:E.312, B:F.313, C:E.312, C:F.313 CA.4: 8 residues within 4Å: Chain A: N.254, E.312 Chain B: N.254, E.312 Chain C: N.254, E.312 Ligands: CA.2, CA.6 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: C:E.312, A:E.312, B:E.312, H2O.12, H2O.31, H2O.49 CA.5: 8 residues within 4Å: Chain A: E.312, F.313 Chain B: E.312, F.313 Chain C: E.312, F.313 Ligands: CA.1, CA.3 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C Metal complexes: A:E.312, A:F.313, B:E.312, B:F.313, C:E.312, C:F.313 CA.6: 8 residues within 4Å: Chain A: N.254, E.312 Chain B: N.254, E.312 Chain C: N.254, E.312 Ligands: CA.2, CA.4 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: C:E.312, A:E.312, B:E.312, H2O.12, H2O.31, H2O.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McMahon, S.A. et al., The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat.Struct.Mol.Biol. (2005)

Release Date

2005-09-20

Peptides

Major Tropism Determinant (Mtd-P1): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Major Tropism Determinant (Mtd-P1)