SMTL ID : 1yu9.1 (1 other biounit)

GppNHp-Bound Rab4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.25, T.43 Ligands: GNP.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.25, A:T.43, H2O.1, H2O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Q.70, E.71, R.72 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.71, A:R.72 Water bridges: A:Q.70, A:Q.70 Salt bridges: A:R.72 SO4.3: 1 residues within 4Å: Chain A: R.72 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.70, A:R.72, A:R.72 Salt bridges: A:R.72

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.4: 23 residues within 4Å: Chain A: N.19, A.20, G.21, T.22, G.23, K.24, S.25, C.26, F.36, S.40, N.41, H.42, T.43, A.68, G.69, N.124, K.125, D.127, L.128, S.154, A.155, L.156 Ligands: MG.1 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:G.21, A:T.22, A:T.22, A:G.23, A:K.24, A:K.24, A:S.25, A:S.25, A:C.26, A:S.40, A:N.41, A:H.42, A:T.43, A:G.69, A:N.124, A:K.125, A:A.155, A:L.156 Water bridges: A:S.40, A:S.40, A:T.43, A:D.66, A:Q.70, A:Q.70, A:K.125, A:K.125, A:K.125 Salt bridges: A:D.127 pi-Stacking: A:F.36, A:F.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)

Release Date

2005-07-26

Peptides

GTP-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTP-binding protein

Related Entries With Identical Sequence