SMTL ID : 1yuk.1

The crystal structure of the PSI/Hybrid domain/ I-EGF1 segment from the human integrin beta2 at 1.8 resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 3 residues within 4Å: Chain A: L.27, N.28 Chain B: N.116 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.116, A:N.28 Water bridges: B:N.116, B:N.116, B:N.116 Hydrophobic interactions: A:L.27 NDG.2: 3 residues within 4Å: Chain A: N.94 Chain B: F.21, Q.48 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.94, B:Q.48, B:Q.48 Water bridges: A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, M. et al., The Crystal Structure of the Plexin-Semaphorin-Integrin Domain/Hybrid Domain/I-EGF1 Segment from the Human Integrin {beta}2 Subunit at 1.8-A Resolution. J.Biol.Chem. (2005)

Release Date

2005-07-19

Peptides

Integrin beta-2 A chain: A
Integrin beta-2 B chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Integrin beta-2 A chain

Integrin beta-2 B chain