SMTL ID : 1yum.1

Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 8 residues within 4Å: Chain A: G.30, T.31, F.32, H.36, H.39, S.198, A.199, T.200 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.31, A:F.32, A:A.199, A:T.200 Salt bridges: A:H.36, A:H.39, A:H.39 CIT.3: 7 residues within 4Å: Chain B: F.32, H.36, H.39, V.197, S.198, A.199, T.200 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:A.199 Hydrogen bonds: B:F.32, B:S.198, B:A.199, B:T.200, B:T.200 Water bridges: B:T.31, B:R.203 Salt bridges: B:H.36, B:H.39, B:H.39 CIT.5: 8 residues within 4Å: Chain C: F.32, D.33, H.36, H.39, V.197, S.198, A.199, T.200 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:A.199 Hydrogen bonds: C:T.31, C:F.32, C:D.33, C:A.199, C:T.200 Water bridges: C:T.200 Salt bridges: C:H.36, C:H.39, C:H.39 CIT.7: 8 residues within 4Å: Chain D: T.31, F.32, H.36, H.39, V.197, S.198, A.199, T.200 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:A.199 Hydrogen bonds: D:T.31, D:F.32, D:A.199, D:T.200, D:T.200 Salt bridges: D:H.36, D:H.39, D:H.39

4 x NCN: NICOTINATE MONONUCLEOTIDE(Non-covalent)

NCN.2: 7 residues within 4Å: Chain A: N.60, Y.104, T.105, I.106, A.130, W.137, H.138 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.137, A:W.137 Hydrogen bonds: A:N.60, A:T.105, A:T.105, A:I.106, A:H.138 Water bridges: A:N.60, A:N.60 NCN.4: 5 residues within 4Å: Chain B: N.60, Y.104, T.105, W.137, H.138 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.137, B:W.137 Hydrogen bonds: B:N.60, B:T.105, B:T.105, B:H.138 Water bridges: B:T.31 NCN.6: 6 residues within 4Å: Chain C: N.60, E.96, Y.104, T.105, W.137, H.138 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:W.137 Hydrogen bonds: C:E.96, C:T.105, C:T.105, C:H.138 Water bridges: C:N.60, C:N.60, C:I.106 NCN.8: 5 residues within 4Å: Chain D: N.60, Y.104, T.105, W.137, H.138 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:W.137 Hydrogen bonds: D:N.60, D:N.60, D:T.105, D:T.105, D:I.106, D:H.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, H.J. et al., Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation. J.Mol.Biol. (2005)

Release Date

2005-11-08

Peptides

'Probable nicotinate-nucleotide adenylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

'Probable nicotinate-nucleotide adenylyltransferase

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