SMTL ID : 1yvm.1

E. coli Methionine Aminopeptidase in complex with thiabendazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 2 residues within 4Å: Chain A: H.79 Ligands: TMG.6 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.79, H2O.3, H2O.6, H2O.8 CO.2: 5 residues within 4Å: Chain A: D.97, T.99, D.108, E.235 Ligands: CO.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.97, A:D.108, A:E.235, H2O.7, H2O.7 CO.3: 6 residues within 4Å: Chain A: D.108, H.171, T.202, E.204, E.235 Ligands: CO.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.108, A:H.171, A:E.204, A:E.235, H2O.7 CO.4: 1 residues within 4Å: Chain A: E.123 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.123, H2O.4, H2O.9, H2O.9, H2O.11

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: S.72, I.73, N.74, V.76, S.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.74

1 x TMG: 2-(1,3-THIAZOL-4-YL)-1H-BENZIMIDAZOLE(Non-covalent)

TMG.6: 7 residues within 4Å: Chain A: C.59, Y.62, Y.65, C.70, H.79, H.178 Ligands: CO.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.62, A:Y.65 pi-Stacking: A:Y.65 pi-Cation interactions: A:H.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiffmann, R. et al., Metal Ions as Cofactors for the Binding of Inhibitors to Methionine Aminopeptidase: A Critical View of the Relevance of In Vitro Metalloenzyme Assays. Angew.Chem.Int.Ed.Engl. (2005)

Release Date

2005-06-07

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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