SMTL ID : 1yvs.1 (1 other biounit)

Trimeric domain swapped barnase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: S.38, K.39, G.40 Chain B: S.38, G.40 Chain C: S.38, K.39, G.40 Ligands: SO4.3, SO4.5 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:K.39, C:G.40, B:K.39, B:G.40, A:K.39, A:G.40 SO4.2: 6 residues within 4Å: Chain A: E.73, R.83, R.87, H.102, Y.103 Chain C: K.27 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:E.73 Water bridges: A:E.73, A:E.73 Salt bridges: A:R.83, A:R.87, A:H.102, C:K.27 SO4.3: 10 residues within 4Å: Chain A: S.38, K.39, G.40 Chain B: S.38, K.39, G.40 Chain C: S.38, G.40 Ligands: SO4.1, SO4.5 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:K.39, C:G.40, B:K.39, B:G.40, A:K.39, A:G.40 SO4.4: 6 residues within 4Å: Chain A: K.27 Chain B: E.73, R.83, R.87, H.102, Y.103 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain B Salt bridges: A:K.27, B:R.83, B:R.87, B:H.102 Hydrogen bonds: B:E.73 Water bridges: B:E.73, B:E.73 SO4.5: 10 residues within 4Å: Chain A: S.38, G.40 Chain B: S.38, K.39, G.40 Chain C: S.38, K.39, G.40 Ligands: SO4.1, SO4.3 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:K.39, C:G.40, B:K.39, B:G.40, A:K.39, A:G.40 SO4.6: 6 residues within 4Å: Chain B: K.27 Chain C: E.73, R.83, R.87, H.102, Y.103 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain C Salt bridges: B:K.27, C:R.83, C:R.87, C:H.102 Hydrogen bonds: C:E.73 Water bridges: C:E.73, C:E.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zegers, I. et al., Trimeric domain-swapped barnase. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-02-02

Peptides

BARNASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

BARNASE

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