SMTL ID : 1yw1.1

Structure Of Ytnj From Bacillus Subtilis in complex with FMN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-dimer

Ligands

2 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 8 residues within 4Å: Chain A: H.14, A.57, D.58, G.59, F.70, R.73, Q.130 Ligands: FMN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.73, A:Q.130 Water bridges: A:G.59 Salt bridges: A:H.14, A:R.73 GLC.3: 8 residues within 4Å: Chain B: H.14, A.57, D.58, G.59, F.70, R.73, Q.130 Ligands: FMN.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.73, B:Q.130 Water bridges: B:G.59 Salt bridges: B:H.14, B:R.73

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 18 residues within 4Å: Chain A: F.55, A.57, D.58, T.95, N.124, V.126, P.129, Q.130, H.145, Y.149, A.217, G.218, S.219, S.220, F.235, T.236, H.237 Ligands: GLC.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.55, A:A.217, A:F.235, A:F.235 Hydrogen bonds: A:D.58, A:D.58, A:N.124, A:Q.130, A:Y.149, A:A.217, A:S.219, A:S.220 Salt bridges: A:H.145 FMN.4: 18 residues within 4Å: Chain B: F.55, A.57, D.58, T.95, N.124, V.126, P.129, Q.130, H.145, Y.149, A.217, G.218, S.219, S.220, F.235, T.236, H.237 Ligands: GLC.3 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.55, B:A.217, B:F.235, B:F.235 Hydrogen bonds: B:D.58, B:D.58, B:T.95, B:N.124, B:Q.130, B:Y.149, B:Y.149, B:A.217, B:S.219, B:S.220 Salt bridges: B:H.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorman, J. et al., Structure Of Ytnj From Bacillus Subtilis in complex with FMN. To be Published

Release Date

2005-03-01

Peptides

PROTEIN YTNJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN YTNJ