SMTL ID : 1yy5.1

Crystal structure of Fms1, a polyamine oxidase from Yeast

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.46, R.47, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.294, A:W.440, A:A.449, A:Y.450 Hydrogen bonds: A:A.16, A:A.19, A:A.40, A:R.41, A:R.47, A:S.64, A:W.65, A:W.65, A:V.223, A:V.223, A:T.252, A:E.479, A:G.487, A:A.489 Water bridges: A:G.20, A:G.46, A:R.47, A:L.48, A:L.48, A:G.270, A:H.480 Salt bridges: A:R.47, A:R.47 pi-Stacking: A:Y.445 FAD.2: 40 residues within 4Å: Chain B: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.46, R.47, L.48, I.61, G.62, A.63, S.64, W.65, H.67, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, I.272, L.294, K.296, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:L.294, B:A.449, B:Y.450 Hydrogen bonds: B:A.16, B:I.18, B:A.19, B:A.40, B:R.41, B:R.41, B:R.47, B:A.63, B:S.64, B:W.65, B:W.65, B:V.223, B:V.223, B:E.479, B:G.487, B:A.489 Water bridges: B:L.48, B:L.48 Salt bridges: B:R.47, B:R.47 pi-Stacking: B:Y.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Q. et al., Crystal Structures of Fms1 and its Complex with Spermine Reveal Substrate Specificity. J.Mol.Biol. (2005)

Release Date

2005-03-08

Peptides

FMS1 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FMS1 protein

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