SMTL ID : 1yyf.1

Correction of X-ray Intensities from an HslV-HslU co-crystal containing lattice translocation defects

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.16 Å

Oligo State

hetero-12-12-mer

Ligands

12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: I.17, I.18, P.58, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:I.18, A:I.18, A:P.58, A:G.60, A:V.61, A:G.62, A:K.63, A:T.64, A:T.64, A:T.64, A:E.65, A:E.65 Salt bridges: A:K.63, A:R.393, A:R.393 ADP.2: 15 residues within 4Å: Chain B: H.16, I.17, I.18, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:I.18, B:I.18, B:P.58, B:T.59, B:G.60, B:V.61, B:G.62, B:K.63, B:T.64, B:T.64, B:T.64, B:E.65, B:E.65 Salt bridges: B:K.63, B:R.393, B:R.393 ADP.3: 15 residues within 4Å: Chain E: I.17, I.18, P.58, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:I.18, E:I.18, E:P.58, E:G.60, E:V.61, E:G.62, E:K.63, E:T.64, E:T.64, E:T.64, E:E.65, E:E.65 Salt bridges: E:K.63, E:R.393, E:R.393 ADP.4: 15 residues within 4Å: Chain F: H.16, I.17, I.18, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:I.18, F:I.18, F:P.58, F:T.59, F:G.60, F:V.61, F:G.62, F:K.63, F:T.64, F:T.64, F:T.64, F:E.65, F:E.65 Salt bridges: F:K.63, F:R.393, F:R.393 ADP.5: 15 residues within 4Å: Chain I: I.17, I.18, P.58, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain I Hydrogen bonds: I:I.18, I:I.18, I:P.58, I:G.60, I:V.61, I:G.62, I:K.63, I:T.64, I:T.64, I:T.64, I:E.65, I:E.65 Salt bridges: I:K.63, I:R.393, I:R.393 ADP.6: 15 residues within 4Å: Chain J: H.16, I.17, I.18, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 16 PLIP interactions: 16 interactions with chain J Hydrogen bonds: J:I.18, J:I.18, J:P.58, J:T.59, J:G.60, J:V.61, J:G.62, J:K.63, J:T.64, J:T.64, J:T.64, J:E.65, J:E.65 Salt bridges: J:K.63, J:R.393, J:R.393 ADP.7: 15 residues within 4Å: Chain M: I.17, I.18, P.58, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain M Hydrogen bonds: M:I.18, M:I.18, M:P.58, M:G.60, M:V.61, M:G.62, M:K.63, M:T.64, M:T.64, M:T.64, M:E.65, M:E.65 Salt bridges: M:K.63, M:R.393, M:R.393 ADP.8: 15 residues within 4Å: Chain N: H.16, I.17, I.18, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain N Hydrogen bonds: N:I.18, N:I.18, N:P.58, N:G.60, N:V.61, N:G.62, N:K.63, N:T.64, N:T.64, N:T.64, N:E.65, N:E.65 Salt bridges: N:K.63, N:R.393, N:R.393 ADP.9: 15 residues within 4Å: Chain Q: I.17, I.18, P.58, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain Q Hydrogen bonds: Q:I.18, Q:I.18, Q:P.58, Q:G.60, Q:V.61, Q:G.62, Q:K.63, Q:T.64, Q:T.64, Q:T.64, Q:E.65, Q:E.65 Salt bridges: Q:K.63, Q:R.393, Q:R.393 ADP.10: 15 residues within 4Å: Chain R: H.16, I.17, I.18, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain R Hydrogen bonds: R:I.18, R:I.18, R:P.58, R:G.60, R:V.61, R:G.62, R:K.63, R:T.64, R:T.64, R:T.64, R:E.65, R:E.65 Salt bridges: R:K.63, R:R.393, R:R.393 ADP.11: 15 residues within 4Å: Chain U: I.17, I.18, P.58, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain U Hydrogen bonds: U:I.18, U:I.18, U:P.58, U:G.60, U:V.61, U:G.62, U:K.63, U:T.64, U:T.64, U:T.64, U:E.65, U:E.65 Salt bridges: U:K.63, U:R.393, U:R.393 ADP.12: 15 residues within 4Å: Chain V: H.16, I.17, I.18, T.59, G.60, V.61, G.62, K.63, T.64, E.65, L.335, I.343, A.392, R.393, H.396 15 PLIP interactions: 15 interactions with chain V Hydrogen bonds: V:I.18, V:I.18, V:P.58, V:G.60, V:V.61, V:G.62, V:K.63, V:T.64, V:T.64, V:T.64, V:E.65, V:E.65 Salt bridges: V:K.63, V:R.393, V:R.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Correction of X-ray intensities from an HslV-HslU co-crystal containing lattice-translocation defects. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-07-12

Peptides

ATP-dependent hsl protease ATP-binding subunit hslU: ABEFIJMNQRUV
ATP-dependent protease hslV: CDGHKLOPSTWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

I
A

J
B

M
A

N
B

Q
A

R
B

U
A

V
B

C
D

D
C

G
D

H
C

K
D

L
C

O
D

P
C

S
D

T
C

W
D

X
C

ATP-dependent hsl protease ATP-binding subunit hslU

ATP-dependent protease hslV

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