SMTL ID : 1yyq.1

Y305F Trichodiene Synthase complexed with pyrophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain B: N.225, S.229, E.233 Ligands: POP.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.229, B:E.233, H2O.8 MG.2: 5 residues within 4Å: Chain B: D.100, K.232, R.304 Ligands: MG.3, POP.4 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.100, H2O.8, H2O.8, H2O.8 MG.3: 4 residues within 4Å: Chain B: D.100, E.164 Ligands: MG.2, POP.4 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.100, H2O.8, H2O.8, H2O.8, H2O.8

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.4: 11 residues within 4Å: Chain B: D.100, R.182, N.225, S.229, K.232, E.233, R.304, F.305 Ligands: MG.1, MG.2, MG.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.225, B:S.229 Water bridges: B:D.100, B:N.185, B:N.185, B:K.232, B:D.239, B:D.239 Salt bridges: B:R.182, B:K.232, B:R.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedula, L.S. et al., Molecular Recognition of the Substrate Diphosphate Group Governs Product Diversity in Trichodiene Synthase Mutants. Biochemistry (2005)

Release Date

2005-03-29

Peptides

Trichodiene synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Trichodiene synthase

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