SMTL ID : 1yzk.1

GppNHp bound Rab11 GTPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.34, T.52 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.34, A:T.52, H2O.1, H2O.2

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: D.28, S.29, G.30, V.31, G.32, K.33, S.34, N.35, F.45, N.46, L.47, S.49, S.51, T.52, A.77, G.78, N.133, K.134, D.136, L.137, S.163, A.164, L.165 Ligands: MG.1 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:G.30, A:V.31, A:G.32, A:K.33, A:K.33, A:S.34, A:S.34, A:N.35, A:N.46, A:S.49, A:T.52, A:T.52, A:T.76, A:G.78, A:N.133, A:K.134, A:K.134, A:A.164, A:L.165 Water bridges: A:S.34, A:L.47, A:S.49, A:K.50, A:S.51, A:S.51, A:S.51 Salt bridges: A:D.136 pi-Stacking: A:F.45, A:F.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)

Release Date

2005-07-26

Peptides

Ras-related protein Rab-11A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-11A