SMTL ID : 1yzl.1

GppNHp-Bound Rab9 GTPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.25, T.43, D.66 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.25, A:T.43, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 25 residues within 4Å: Chain A: D.19, G.20, G.21, V.22, G.23, K.24, S.25, S.26, F.36, D.37, S.38, L.40, H.42, T.43, T.67, A.68, G.69, N.128, K.129, D.131, I.132, S.158, A.159, K.160 Ligands: MG.1 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:G.21, A:V.22, A:G.23, A:K.24, A:K.24, A:S.25, A:S.26, A:S.26, A:D.37, A:H.42, A:T.43, A:T.43, A:T.67, A:G.69, A:N.128, A:K.129, A:K.129, A:A.159, A:K.160 Water bridges: A:S.25, A:S.25, A:F.41, A:D.66, A:Q.70, A:Q.70 Salt bridges: A:D.131 pi-Stacking: A:F.36, A:F.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)

Release Date

2005-07-26

Peptides

Ras-related protein Rab-9A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-9A