SMTL ID : 1yzn.1

GppNHp-Bound Ypt1p GTPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.35, T.53 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.35, A:T.53, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: N.29, S.30, G.31, V.32, G.33, K.34, S.35, C.36, Y.46, T.47, N.48, D.49, Y.50, S.52, T.53, G.79, N.134, K.135, D.137, L.138, S.164, A.165, L.166 Ligands: MG.1 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:S.30, A:G.31, A:V.32, A:G.33, A:K.34, A:K.34, A:S.35, A:C.36, A:Y.46, A:D.49, A:T.53, A:T.77, A:G.79, A:N.134, A:K.135, A:K.135, A:A.165, A:L.166 Water bridges: A:S.35, A:I.51, A:T.53, A:D.76, A:Q.80, A:Q.80 Salt bridges: A:D.137 pi-Stacking: A:Y.46, A:Y.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)

Release Date

2005-07-26

Peptides

GTP-binding protein YPT1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTP-binding protein YPT1