SMTL ID : 1yzq.1

GppNHp-Bound Rab6 GTPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.20, T.38 Ligands: GNP.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.20, A:T.38, H2O.2

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: Q.15, S.16, V.17, G.18, K.19, T.20, S.21, F.31, D.32, N.33, T.34, Y.35, A.37, T.38, A.63, G.64, N.119, K.120, D.122, L.123, S.149, A.150, K.151 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:S.16, A:V.17, A:G.18, A:K.19, A:K.19, A:T.20, A:S.21, A:S.21, A:D.32, A:T.38, A:T.38, A:G.64, A:N.119, A:K.120, A:K.120, A:A.150, A:K.151 Water bridges: A:T.20, A:N.33, A:Y.35, A:D.61, A:Q.65, A:Q.65 Salt bridges: A:D.122 pi-Stacking: A:F.31, A:F.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)

Release Date

2005-07-26

Peptides

small GTP binding protein RAB6 isoform: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

small GTP binding protein RAB6 isoform