SMTL ID : 1z07.1

GppNHp-Bound Rab5c G55Q mutant GTPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.19, T.37 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.19, A:T.37, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 22 residues within 4Å: Chain A: S.14, A.15, V.16, G.17, K.18, S.19, S.20, F.30, H.31, E.32, Q.34, S.36, T.37, G.63, N.118, K.119, D.121, L.122, S.148, A.149, K.150 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:A.15, A:V.16, A:G.17, A:K.18, A:K.18, A:S.19, A:S.20, A:S.20, A:H.31, A:T.37, A:T.37, A:G.63, A:N.118, A:K.119, A:K.119, A:A.149, A:K.150 Water bridges: A:S.19, A:S.19, A:E.32, A:E.32, A:T.37, A:Q.64 Salt bridges: A:D.121 pi-Stacking: A:F.30, A:F.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eathiraj, S. et al., Structural basis of family-wide Rab GTPase recognition by rabenosyn-5. Nature (2005)

Release Date

2005-07-26

Peptides

Ras-related protein Rab-5C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-5C