SMTL ID : 1z2c.1 (1 other biounit)

Crystal structure of mDIA1 GBD-FH3 in complex with RhoC-GMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.19, T.37 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.19, A:T.37 MG.3: 1 residues within 4Å: Chain B: D.298 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain C: T.19, T.37 Ligands: GNP.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.19, C:T.37 MG.6: 1 residues within 4Å: Chain D: D.298 No protein-ligand interaction detected (PLIP)

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 23 residues within 4Å: Chain A: D.13, G.14, A.15, C.16, G.17, K.18, T.19, C.20, F.30, P.31, V.33, Y.34, P.36, T.37, T.60, G.62, K.118, D.120, L.121, S.160, A.161, K.162 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:A.15, A:C.16, A:G.17, A:K.18, A:K.18, A:T.19, A:T.19, A:C.20, A:V.33, A:Y.34, A:Y.34, A:T.37, A:T.60, A:G.62, A:K.118, A:S.160, A:A.161, A:K.162 Salt bridges: A:D.120 pi-Stacking: A:F.30 GNP.5: 23 residues within 4Å: Chain C: D.13, G.14, A.15, C.16, G.17, K.18, T.19, C.20, F.30, P.31, V.33, Y.34, P.36, T.37, T.60, G.62, K.118, D.120, L.121, S.160, A.161, K.162 Ligands: MG.4 20 PLIP interactions: 20 interactions with chain C Hydrogen bonds: C:A.15, C:C.16, C:G.17, C:K.18, C:K.18, C:T.19, C:T.19, C:C.20, C:V.33, C:Y.34, C:Y.34, C:T.37, C:T.60, C:G.62, C:K.118, C:S.160, C:A.161, C:K.162 Salt bridges: C:D.120 pi-Stacking: C:F.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rose, R. et al., Structural and mechanistic insights into the interaction between Rho and mammalian Dia. Nature (2005)

Release Date

2005-05-10

Peptides

Rho-related GTP-binding protein RhoC: AC
Diaphanous protein homolog 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Rho-related GTP-binding protein RhoC

Diaphanous protein homolog 1

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