SMTL ID : 1z3z.1

The crystal structure of a DGD mutant: Q52A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: A.93, T.96, P.97, P.98, L.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.96, A:L.100, A:L.100 Water bridges: A:G.99

1 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: L.76, S.78, T.301, V.303, D.305 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.76, A:S.78, A:T.301, A:V.303, A:D.305

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.3: 13 residues within 4Å: Chain A: T.108, G.109, A.110, N.113, W.136, H.137, G.138, E.208, D.241, A.243, Q.244, K.270 Ligands: MES.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.208, A:K.270 Hydrogen bonds: A:T.108, A:G.109, A:A.110, A:N.113, A:Q.244 Salt bridges: A:K.270

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 7 residues within 4Å: Chain A: W.136, A.150, S.213, Q.244, K.270, R.404 Ligands: PLP.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.213, A:Q.244 Salt bridges: A:K.270, A:R.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fogle, E.J. et al., Role of q52 in catalysis of decarboxylation and transamination in dialkylglycine decarboxylase. Biochemistry (2005)

Release Date

2006-01-03

Peptides

dialkylglycine decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

dialkylglycine decarboxylase