SMTL ID : 1z5m.1

Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-dimethylpropanediamide Complexed with Human PDK1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.3, R.58, T.75, F.76, Q.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.75, A:Q.77, A:Q.77 Salt bridges: A:K.3, A:R.58

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: V.23, K.38, T.149 Ligands: LI8.3 Ligand excluded by PLIP

1 x LI8: N-(3-{[5-BROMO-2-({3-[(PYRROLIDIN-1-YLCARBONYL)AMINO]PHENYL}AMINO)PYRIMIDIN-4-YL]AMINO}PROPYL)-2,2-DIMETHYLMALONAMIDE(Non-covalent)

LI8.3: 18 residues within 4Å: Chain A: L.15, G.16, E.17, G.18, S.21, V.23, A.36, K.38, L.86, S.87, Y.88, A.89, K.90, G.92, E.93, L.139, D.150 Ligands: CL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.15, A:Y.88 Hydrogen bonds: A:L.15, A:G.16, A:A.89, A:A.89, A:E.93, A:E.93

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: F.9, K.10, F.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.11 Water bridges: A:F.9, A:F.11 GOL.5: 3 residues within 4Å: Chain A: F.11, K.81, Y.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.81 GOL.6: 5 residues within 4Å: Chain A: L.40, Y.53, V.54, E.57, G.152 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.21, A:E.57 Water bridges: A:F.20, A:S.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feldman, R.I. et al., Novel small molecule inhibitors of 3-phosphoinositide-dependent kinase-1. J.Biol.Chem. (2005)

Release Date

2005-04-19

Peptides

3-phosphoinositide dependent protein kinase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoinositide dependent protein kinase-1

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