SMTL ID : 1z5y.1

Crystal Structure Of The Disulfide-Linked Complex Between The N-Terminal Domain Of The Electron Transfer Catalyst DsbD and The Cytochrome c Biogenesis Protein CcmG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: H.52, S.91 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: P.14 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Y.42, K.44, Q.45, Q.101 Chain B: W.37 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.44, A:K.44, A:Q.45, A:Q.101, A:Q.101 EDO.3: 8 residues within 4Å: Chain A: A.14, F.18, Y.100, Q.101, G.102, Y.110, P.111, E.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.102, A:G.102, A:E.113, A:E.113 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stirnimann, C.U. et al., Structural Basis and Kinetics of DsbD-Dependent Cytochrome c Maturation. STRUCTURE (2005)

Release Date

2005-07-19

Peptides

Thiol:disulfide interchange protein dsbD: A
Thiol:disulfide interchange protein dsbE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Thiol:disulfide interchange protein dsbD

Thiol:disulfide interchange protein dsbE

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