SMTL ID : 1z68.1

Crystal Structure Of Human Fibroblast Activation Protein alpha

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: D.35, N.37, N.54 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: D.35, N.36, N.37, N.54 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: N.148, I.154, N.189, T.191, D.192, K.220 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.11, T.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.13 NAG.5: 4 residues within 4Å: Chain A: N.276, S.304, R.305, D.634 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain B: K.7, N.11, T.13 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.7, B:N.11 Water bridges: B:T.13, B:T.13 NAG.7: 6 residues within 4Å: Chain B: N.148, E.187, N.189, T.191, D.192, R.225 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.189, B:D.192, B:R.225 NAG.8: 6 residues within 4Å: Chain B: V.274, N.276, S.304, R.305, Y.551, R.552 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.274 NAG.9: 1 residues within 4Å: Chain B: N.641 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.641

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aertgeerts, K. et al., Structural and kinetic analysis of the substrate specificity of human fibroblast activation protein alpha. J.Biol.Chem. (2005)

Release Date

2005-04-12

Peptides

fibroblast activation protein, alpha subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

fibroblast activation protein, alpha subunit