SMTL ID : 1z6g.1

Crystal structure of guanylate kinase from Plasmodium falciparum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.31, S.32, G.33, V.34, G.35, K.36, G.37, E.120 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.33, A:V.34, A:G.35, A:K.36, A:G.37 Water bridges: A:G.35, A:T.38 Salt bridges: A:K.36 SO4.2: 3 residues within 4Å: Chain A: R.60, K.61, N.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.61, A:N.98, A:N.98 Water bridges: A:R.60 SO4.3: 4 residues within 4Å: Chain A: K.62, E.66, K.67, E.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.68 Salt bridges: A:K.62, A:K.67 SO4.4: 6 residues within 4Å: Chain A: S.32, Y.95, L.155, R.158, N.159, R.169 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.32, A:Y.95, A:N.159 Water bridges: A:R.158 Salt bridges: A:R.158 SO4.5: 2 residues within 4Å: Chain A: V.150, R.154 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.154

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.6: 9 residues within 4Å: Chain A: P.31, S.32, D.93, N.94, N.122, N.124, Q.172, L.173, E.176 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.32, A:N.94, A:N.122, A:N.124 Water bridges: A:N.124 Salt bridges: A:D.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vedadi, M. et al., Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms. Mol.Biochem.Parasitol. (2007)

Release Date

2005-04-05

Peptides

guanylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

guanylate kinase