SMTL ID : 1z7a.1 (1 other biounit)

Crystal structure of probable Polysaccharide deacetylase from Pseudomonas aeruginosa PAO1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-tetramer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: H.18, D.24, A.25, R.26, G.247, A.248, T.249, P.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.24, A:T.249 EDO.2: 5 residues within 4Å: Chain A: R.80 Chain B: D.8, G.11, Y.12, Y.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.80, A:R.80 EDO.5: 9 residues within 4Å: Chain B: H.18, D.24, A.25, R.26, G.247, A.248, T.249, P.251, K.284 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.24, B:A.248 EDO.6: 5 residues within 4Å: Chain B: R.80 Chain C: D.8, G.11, Y.12, Y.195 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.80, B:R.80 EDO.10: 9 residues within 4Å: Chain C: H.18, D.24, A.25, R.26, G.247, A.248, T.249, P.251, K.284 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.24, C:A.248 EDO.11: 5 residues within 4Å: Chain C: R.80 Chain D: D.8, G.11, Y.12, Y.195 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.80, C:R.80 EDO.13: 9 residues within 4Å: Chain D: H.18, D.24, A.25, R.26, G.247, A.248, T.249, P.251, K.284 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.24, D:A.248 EDO.14: 5 residues within 4Å: Chain A: D.8, G.11, Y.12, Y.195 Chain D: R.80 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.80, D:R.80

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: E.122, I.123, L.152, T.156, Q.158, R.159, P.160 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.123, A:Q.158 Water bridges: A:T.156, A:Q.158, A:E.291, A:E.291 GOL.7: 6 residues within 4Å: Chain B: E.122, I.123, T.156, Q.158, R.159, E.291 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.123, B:T.156, B:E.291 Water bridges: B:H.121, B:T.156, B:Q.158 GOL.15: 6 residues within 4Å: Chain D: E.122, I.123, T.156, Q.158, R.159, E.291 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:I.123, D:T.156 Water bridges: D:T.156, D:R.295

5 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 6 residues within 4Å: Chain A: W.84, L.87, K.88, K.91, D.119 Chain B: N.14 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.84, A:K.88, A:K.91 Hydrogen bonds: A:D.119 IPA.8: 7 residues within 4Å: Chain B: W.84, L.87, K.88, K.91, A.115, D.119 Chain C: N.14 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.84, B:K.88, B:A.115 Hydrogen bonds: B:L.87 Water bridges: B:D.119 IPA.9: 6 residues within 4Å: Chain B: P.96, W.286, F.287, A.288, R.289, D.292 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.96, B:W.286, B:D.292 Hydrogen bonds: B:R.289 IPA.12: 6 residues within 4Å: Chain C: W.84, L.87, K.88, K.91, D.119 Chain D: N.14 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.84, C:K.88 Hydrogen bonds: C:D.119 IPA.16: 6 residues within 4Å: Chain D: W.84, L.87, K.88, K.91, A.115, D.119 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.84, D:A.115 Hydrogen bonds: D:L.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of probable Polysaccharide deacetylase from Pseudomonas aeruginosa PAO1. To be Published

Release Date

2005-05-10

Peptides

conserved hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

conserved hypothetical protein

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