SMTL ID : 1z84.1

X-ray structure of galt-like protein from arabidopsis thaliana at5g18200

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.63, C.66, H.133, H.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.66, A:H.133, A:H.184 ZN.2: 4 residues within 4Å: Chain A: C.216, C.219, H.255, H.310 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.216, A:C.219, A:H.255, A:H.310 ZN.7: 5 residues within 4Å: Chain B: C.63, F.65, C.66, H.133, H.184 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.63, B:C.66, B:H.133, B:H.184 ZN.8: 4 residues within 4Å: Chain B: C.216, C.219, H.255, H.310 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.216, B:C.219, B:H.255, B:H.310

2 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.3: 17 residues within 4Å: Chain A: P.64, F.65, E.72, C.73, A.74, I.92, E.93, N.94, L.95, Y.96, V.126, N.173, A.180, S.181, M.182, H.186, Q.188 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:E.72, A:A.74, A:N.94, A:L.95, A:Y.96, A:N.173, A:S.181, A:S.181, A:M.182, A:Q.188, A:Q.188 Water bridges: A:N.94, A:Y.96 Salt bridges: A:H.186 pi-Stacking: A:F.65, A:F.65, A:Y.96 AMP.9: 16 residues within 4Å: Chain B: F.65, E.72, C.73, A.74, I.92, E.93, N.94, L.95, Y.96, V.126, N.173, A.180, S.181, M.182, H.186, Q.188 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:E.72, B:A.74, B:N.94, B:L.95, B:Y.96, B:N.173, B:S.181, B:S.181, B:M.182, B:Q.188, B:Q.188 Water bridges: B:N.173 Salt bridges: B:H.186 pi-Stacking: B:F.65, B:F.65

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 10 residues within 4Å: Chain A: A.238, A.242, Y.244, P.245, F.246, E.247, N.334, V.336, P.338, V.341 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.246, A:E.247, A:N.334, A:V.336 EDO.5: 5 residues within 4Å: Chain A: T.31, T.198, H.295, F.312, Q.314 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.314 Water bridges: A:R.33, A:R.33, A:T.198, A:R.202, A:T.243, A:E.247, A:H.295 EDO.6: 6 residues within 4Å: Chain A: Y.244, V.316, P.317, Q.318, S.320 Chain B: I.327 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.291, A:Q.318 Water bridges: A:L.319, A:S.320 EDO.10: 10 residues within 4Å: Chain B: A.238, A.242, Y.244, P.245, F.246, E.247, N.334, V.336, P.338, V.341 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.246, B:E.247, B:N.334, B:V.336 EDO.11: 5 residues within 4Å: Chain B: T.31, T.198, H.295, F.312, Q.314 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.314 Water bridges: B:R.33, B:T.198, B:T.198, B:R.202, B:T.243, B:E.247 EDO.12: 6 residues within 4Å: Chain A: I.327 Chain B: Y.244, N.291, V.316, Q.318, S.320 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.291, B:Q.318, B:S.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MCCOY, J.G. et al., Structure and Mechanism of an ADP-Glucose Phosphorylase from Arabidopsis thaliana. Biochemistry (2006)

Release Date

2005-04-19

Peptides

galactose-1-phosphate uridyl transferase-like protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

galactose-1-phosphate uridyl transferase-like protein

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