SMTL ID : 1z8l.2 (1 other biounit)

Crystal structure of prostate-specific membrane antigen, a tumor marker and peptidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-dimer

Ligands

4 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.1: 2 residues within 4Å: Chain A: N.21, Q.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.21 Hydrophobic interactions: A:Q.40 NAG-NDG.3: 1 residues within 4Å: Chain A: N.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.98 NAG-NDG.6: 2 residues within 4Å: Chain B: N.21, Q.40 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.21 Hydrophobic interactions: B:Q.40 NAG-NDG.8: 1 residues within 4Å: Chain B: N.98 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.98

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: N.66, H.69 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain A: W.191, G.403, N.404, E.431, F.510, Y.511 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain A: S.417, N.421 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 2 residues within 4Å: Chain B: N.66, H.69 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 6 residues within 4Å: Chain B: W.191, G.403, N.404, E.431, F.510, Y.511 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 2 residues within 4Å: Chain B: S.417, N.421 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 5 residues within 4Å: Chain A: S.579, A.580, N.583, Q.685 Chain B: Y.222 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.579, B:Y.222, B:Y.222 NAG.12: 2 residues within 4Å: Chain A: E.82, N.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.82, A:N.85, A:N.85 NAG.15: 5 residues within 4Å: Chain A: Y.222 Chain B: S.579, A.580, N.583, Q.685 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.579, A:Y.222, A:Y.222 NAG.16: 2 residues within 4Å: Chain B: E.82, N.85 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.82, B:N.85, B:N.85

4 x ZN: ZINC ION(Non-covalent)

ZN.13: 6 residues within 4Å: Chain A: H.322, D.332, E.369, D.398, N.464 Ligands: ZN.14 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.322, A:D.332, A:D.398, A:D.398, H2O.1 ZN.14: 5 residues within 4Å: Chain A: D.332, E.370, Y.497, H.498 Ligands: ZN.13 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.332, A:E.370, A:H.498, H2O.1 ZN.17: 6 residues within 4Å: Chain B: H.322, D.332, E.369, D.398, N.464 Ligands: ZN.18 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.322, B:D.332, B:D.398, B:D.398, H2O.1 ZN.18: 5 residues within 4Å: Chain B: D.332, E.370, Y.497, H.498 Ligands: ZN.17 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.332, B:E.370, B:H.498, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davis, M.I. et al., Crystal structure of prostate-specific membrane antigen, a tumor marker and peptidase. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-04-19

Peptides

Glutamate carboxypeptidase II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Glutamate carboxypeptidase II

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